Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_6040

Experiment: Ying_AminoAcid20 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_6039 and Pf6N2E2_6040 are separated by 98 nucleotidesPf6N2E2_6040 and Pf6N2E2_6041 are separated by 144 nucleotidesPf6N2E2_6041 and Pf6N2E2_6042 are separated by 127 nucleotides Pf6N2E2_6039 - Probable lipoprotein signal peptide, at 6,859,193 to 6,860,248 _6039 Pf6N2E2_6040 - hypothetical protein, at 6,860,347 to 6,861,024 _6040 Pf6N2E2_6041 - hypothetical protein, at 6,861,169 to 6,861,792 _6041 Pf6N2E2_6042 - hypothetical protein, at 6,861,920 to 6,862,060 _6042 Position (kb) 6860 6861 6862Strain fitness (log2 ratio) -2 -1 0 1at 6859.357 kb on + strand, within Pf6N2E2_6039at 6859.357 kb on + strand, within Pf6N2E2_6039at 6859.357 kb on + strand, within Pf6N2E2_6039at 6859.357 kb on + strand, within Pf6N2E2_6039at 6859.358 kb on - strand, within Pf6N2E2_6039at 6859.650 kb on + strand, within Pf6N2E2_6039at 6859.859 kb on + strand, within Pf6N2E2_6039at 6859.860 kb on - strand, within Pf6N2E2_6039at 6859.860 kb on - strand, within Pf6N2E2_6039at 6859.929 kb on + strand, within Pf6N2E2_6039at 6859.929 kb on + strand, within Pf6N2E2_6039at 6859.930 kb on - strand, within Pf6N2E2_6039at 6859.930 kb on - strand, within Pf6N2E2_6039at 6859.930 kb on - strand, within Pf6N2E2_6039at 6859.930 kb on - strand, within Pf6N2E2_6039at 6859.930 kb on - strand, within Pf6N2E2_6039at 6860.268 kb on - strandat 6860.298 kb on + strandat 6860.299 kb on - strandat 6860.348 kb on + strandat 6860.348 kb on + strandat 6860.348 kb on + strandat 6860.349 kb on - strandat 6860.456 kb on + strand, within Pf6N2E2_6040at 6860.456 kb on + strand, within Pf6N2E2_6040at 6860.457 kb on - strand, within Pf6N2E2_6040at 6860.457 kb on - strand, within Pf6N2E2_6040at 6860.564 kb on - strand, within Pf6N2E2_6040at 6860.661 kb on - strand, within Pf6N2E2_6040at 6860.818 kb on + strand, within Pf6N2E2_6040at 6860.827 kb on + strand, within Pf6N2E2_6040at 6861.055 kb on + strandat 6861.055 kb on + strandat 6861.055 kb on + strandat 6861.056 kb on - strandat 6861.063 kb on - strandat 6861.092 kb on - strandat 6861.132 kb on + strandat 6861.132 kb on + strandat 6861.133 kb on - strandat 6861.270 kb on + strand, within Pf6N2E2_6041at 6861.271 kb on - strand, within Pf6N2E2_6041at 6861.397 kb on + strand, within Pf6N2E2_6041at 6861.475 kb on + strand, within Pf6N2E2_6041at 6861.532 kb on + strand, within Pf6N2E2_6041at 6861.562 kb on + strand, within Pf6N2E2_6041at 6861.563 kb on - strand, within Pf6N2E2_6041at 6861.564 kb on + strand, within Pf6N2E2_6041at 6861.564 kb on + strand, within Pf6N2E2_6041at 6861.564 kb on + strand, within Pf6N2E2_6041at 6861.564 kb on + strand, within Pf6N2E2_6041at 6861.564 kb on + strand, within Pf6N2E2_6041at 6861.564 kb on + strand, within Pf6N2E2_6041at 6861.564 kb on + strand, within Pf6N2E2_6041at 6861.565 kb on - strand, within Pf6N2E2_6041at 6861.565 kb on - strand, within Pf6N2E2_6041at 6861.565 kb on - strand, within Pf6N2E2_6041at 6861.565 kb on - strand, within Pf6N2E2_6041at 6861.565 kb on - strand, within Pf6N2E2_6041at 6861.565 kb on - strand, within Pf6N2E2_6041at 6861.565 kb on - strand, within Pf6N2E2_6041at 6861.583 kb on + strand, within Pf6N2E2_6041at 6861.583 kb on + strand, within Pf6N2E2_6041at 6861.583 kb on + strand, within Pf6N2E2_6041at 6861.583 kb on + strand, within Pf6N2E2_6041at 6861.583 kb on + strand, within Pf6N2E2_6041at 6861.583 kb on + strand, within Pf6N2E2_6041at 6861.583 kb on + strand, within Pf6N2E2_6041at 6861.583 kb on + strand, within Pf6N2E2_6041at 6861.583 kb on + strand, within Pf6N2E2_6041at 6861.583 kb on + strand, within Pf6N2E2_6041at 6861.584 kb on - strand, within Pf6N2E2_6041at 6861.584 kb on - strand, within Pf6N2E2_6041at 6861.584 kb on - strand, within Pf6N2E2_6041at 6861.584 kb on - strand, within Pf6N2E2_6041at 6861.637 kb on + strand, within Pf6N2E2_6041at 6861.637 kb on + strand, within Pf6N2E2_6041at 6861.637 kb on + strand, within Pf6N2E2_6041at 6861.637 kb on + strand, within Pf6N2E2_6041at 6861.637 kb on + strand, within Pf6N2E2_6041at 6861.637 kb on + strand, within Pf6N2E2_6041at 6861.637 kb on + strand, within Pf6N2E2_6041at 6861.637 kb on + strand, within Pf6N2E2_6041at 6861.637 kb on + strand, within Pf6N2E2_6041at 6861.637 kb on + strand, within Pf6N2E2_6041at 6861.637 kb on + strand, within Pf6N2E2_6041at 6861.638 kb on - strand, within Pf6N2E2_6041at 6861.638 kb on - strand, within Pf6N2E2_6041at 6861.638 kb on - strand, within Pf6N2E2_6041at 6861.638 kb on - strand, within Pf6N2E2_6041at 6861.638 kb on - strand, within Pf6N2E2_6041at 6861.638 kb on - strand, within Pf6N2E2_6041at 6861.638 kb on - strand, within Pf6N2E2_6041at 6861.638 kb on - strand, within Pf6N2E2_6041at 6861.638 kb on - strand, within Pf6N2E2_6041at 6861.638 kb on - strand, within Pf6N2E2_6041at 6861.638 kb on - strand, within Pf6N2E2_6041at 6861.641 kb on + strand, within Pf6N2E2_6041at 6861.641 kb on + strand, within Pf6N2E2_6041at 6861.641 kb on + strand, within Pf6N2E2_6041at 6861.641 kb on + strand, within Pf6N2E2_6041at 6861.641 kb on + strand, within Pf6N2E2_6041at 6861.641 kb on + strand, within Pf6N2E2_6041at 6861.641 kb on + strand, within Pf6N2E2_6041at 6861.641 kb on + strand, within Pf6N2E2_6041at 6861.641 kb on + strand, within Pf6N2E2_6041at 6861.642 kb on - strand, within Pf6N2E2_6041at 6861.642 kb on - strand, within Pf6N2E2_6041at 6861.642 kb on - strand, within Pf6N2E2_6041at 6861.642 kb on - strand, within Pf6N2E2_6041at 6861.642 kb on - strand, within Pf6N2E2_6041at 6861.772 kb on + strandat 6861.772 kb on + strandat 6861.772 kb on + strandat 6861.772 kb on + strandat 6861.772 kb on + strandat 6861.773 kb on - strandat 6861.773 kb on - strandat 6861.773 kb on - strandat 6861.773 kb on - strandat 6861.790 kb on + strandat 6861.921 kb on + strandat 6861.921 kb on + strandat 6861.921 kb on + strandat 6861.921 kb on + strandat 6861.921 kb on + strandat 6861.923 kb on + strandat 6861.923 kb on + strandat 6861.923 kb on + strandat 6861.923 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3
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6,859,357 + Pf6N2E2_6039 0.16 +0.4
6,859,357 + Pf6N2E2_6039 0.16 -0.6
6,859,357 + Pf6N2E2_6039 0.16 -0.3
6,859,357 + Pf6N2E2_6039 0.16 -0.6
6,859,358 - Pf6N2E2_6039 0.16 -2.0
6,859,650 + Pf6N2E2_6039 0.43 -0.6
6,859,859 + Pf6N2E2_6039 0.63 +0.4
6,859,860 - Pf6N2E2_6039 0.63 -0.6
6,859,860 - Pf6N2E2_6039 0.63 -1.2
6,859,929 + Pf6N2E2_6039 0.70 -0.6
6,859,929 + Pf6N2E2_6039 0.70 +0.4
6,859,930 - Pf6N2E2_6039 0.70 -0.6
6,859,930 - Pf6N2E2_6039 0.70 -0.4
6,859,930 - Pf6N2E2_6039 0.70 +0.4
6,859,930 - Pf6N2E2_6039 0.70 -0.6
6,859,930 - Pf6N2E2_6039 0.70 -0.6
6,860,268 - -0.9
6,860,298 + +0.4
6,860,299 - +0.4
6,860,348 + +0.4
6,860,348 + -2.2
6,860,348 + -1.5
6,860,349 - +0.4
6,860,456 + Pf6N2E2_6040 0.16 +0.4
6,860,456 + Pf6N2E2_6040 0.16 -0.6
6,860,457 - Pf6N2E2_6040 0.16 -1.6
6,860,457 - Pf6N2E2_6040 0.16 -0.6
6,860,564 - Pf6N2E2_6040 0.32 +0.4
6,860,661 - Pf6N2E2_6040 0.46 -0.6
6,860,818 + Pf6N2E2_6040 0.69 -2.2
6,860,827 + Pf6N2E2_6040 0.71 -0.6
6,861,055 + -0.6
6,861,055 + -0.6
6,861,055 + -0.6
6,861,056 - +0.4
6,861,063 - +1.4
6,861,092 - -0.6
6,861,132 + +0.4
6,861,132 + +0.4
6,861,133 - +0.4
6,861,270 + Pf6N2E2_6041 0.16 +0.4
6,861,271 - Pf6N2E2_6041 0.16 +0.4
6,861,397 + Pf6N2E2_6041 0.37 -0.3
6,861,475 + Pf6N2E2_6041 0.49 +0.4
6,861,532 + Pf6N2E2_6041 0.58 +0.4
6,861,562 + Pf6N2E2_6041 0.63 +0.4
6,861,563 - Pf6N2E2_6041 0.63 +0.4
6,861,564 + Pf6N2E2_6041 0.63 -0.4
6,861,564 + Pf6N2E2_6041 0.63 -1.6
6,861,564 + Pf6N2E2_6041 0.63 +0.4
6,861,564 + Pf6N2E2_6041 0.63 +0.4
6,861,564 + Pf6N2E2_6041 0.63 -1.6
6,861,564 + Pf6N2E2_6041 0.63 -0.6
6,861,564 + Pf6N2E2_6041 0.63 -1.2
6,861,565 - Pf6N2E2_6041 0.63 +0.4
6,861,565 - Pf6N2E2_6041 0.63 +0.4
6,861,565 - Pf6N2E2_6041 0.63 -0.7
6,861,565 - Pf6N2E2_6041 0.63 -1.1
6,861,565 - Pf6N2E2_6041 0.63 -1.1
6,861,565 - Pf6N2E2_6041 0.63 +0.4
6,861,565 - Pf6N2E2_6041 0.63 -0.8
6,861,583 + Pf6N2E2_6041 0.66 -0.3
6,861,583 + Pf6N2E2_6041 0.66 +0.4
6,861,583 + Pf6N2E2_6041 0.66 -0.6
6,861,583 + Pf6N2E2_6041 0.66 -1.6
6,861,583 + Pf6N2E2_6041 0.66 -0.6
6,861,583 + Pf6N2E2_6041 0.66 +0.4
6,861,583 + Pf6N2E2_6041 0.66 +0.4
6,861,583 + Pf6N2E2_6041 0.66 +0.4
6,861,583 + Pf6N2E2_6041 0.66 -0.3
6,861,583 + Pf6N2E2_6041 0.66 -0.1
6,861,584 - Pf6N2E2_6041 0.67 +0.4
6,861,584 - Pf6N2E2_6041 0.67 +0.2
6,861,584 - Pf6N2E2_6041 0.67 +0.4
6,861,584 - Pf6N2E2_6041 0.67 +0.4
6,861,637 + Pf6N2E2_6041 0.75 -1.0
6,861,637 + Pf6N2E2_6041 0.75 +0.4
6,861,637 + Pf6N2E2_6041 0.75 -0.7
6,861,637 + Pf6N2E2_6041 0.75 +0.4
6,861,637 + Pf6N2E2_6041 0.75 +0.4
6,861,637 + Pf6N2E2_6041 0.75 +0.4
6,861,637 + Pf6N2E2_6041 0.75 +0.4
6,861,637 + Pf6N2E2_6041 0.75 -0.7
6,861,637 + Pf6N2E2_6041 0.75 +0.4
6,861,637 + Pf6N2E2_6041 0.75 +0.4
6,861,637 + Pf6N2E2_6041 0.75 +0.4
6,861,638 - Pf6N2E2_6041 0.75 +0.4
6,861,638 - Pf6N2E2_6041 0.75 -0.6
6,861,638 - Pf6N2E2_6041 0.75 -1.1
6,861,638 - Pf6N2E2_6041 0.75 -1.8
6,861,638 - Pf6N2E2_6041 0.75 +0.4
6,861,638 - Pf6N2E2_6041 0.75 -1.2
6,861,638 - Pf6N2E2_6041 0.75 -0.6
6,861,638 - Pf6N2E2_6041 0.75 +0.4
6,861,638 - Pf6N2E2_6041 0.75 +0.4
6,861,638 - Pf6N2E2_6041 0.75 +0.4
6,861,638 - Pf6N2E2_6041 0.75 -0.8
6,861,641 + Pf6N2E2_6041 0.76 +0.4
6,861,641 + Pf6N2E2_6041 0.76 -0.5
6,861,641 + Pf6N2E2_6041 0.76 -0.6
6,861,641 + Pf6N2E2_6041 0.76 -1.6
6,861,641 + Pf6N2E2_6041 0.76 -1.2
6,861,641 + Pf6N2E2_6041 0.76 -1.6
6,861,641 + Pf6N2E2_6041 0.76 +0.4
6,861,641 + Pf6N2E2_6041 0.76 +0.9
6,861,641 + Pf6N2E2_6041 0.76 -1.2
6,861,642 - Pf6N2E2_6041 0.76 -0.6
6,861,642 - Pf6N2E2_6041 0.76 +0.4
6,861,642 - Pf6N2E2_6041 0.76 -0.8
6,861,642 - Pf6N2E2_6041 0.76 +0.4
6,861,642 - Pf6N2E2_6041 0.76 +0.4
6,861,772 + +0.2
6,861,772 + +0.4
6,861,772 + +0.4
6,861,772 + +0.0
6,861,772 + -0.6
6,861,773 - -0.6
6,861,773 - +0.4
6,861,773 - +0.4
6,861,773 - -0.6
6,861,790 + +0.4
6,861,921 + +0.4
6,861,921 + +0.4
6,861,921 + +0.4
6,861,921 + +0.4
6,861,921 + -0.6
6,861,923 + -1.5
6,861,923 + -1.6
6,861,923 + +0.4
6,861,923 + -0.5

Or see this region's nucleotide sequence