Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_583

Experiment: Ying_AminoAcid20 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_582 and Pf6N2E2_583 are separated by 1 nucleotidesPf6N2E2_583 and Pf6N2E2_584 are separated by 4 nucleotides Pf6N2E2_582 - Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1), at 657,443 to 658,462 _582 Pf6N2E2_583 - Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1), at 658,464 to 659,537 _583 Pf6N2E2_584 - ABC transporter, periplasmic substrate-binding protein, at 659,542 to 661,395 _584 Position (kb) 658 659 660Strain fitness (log2 ratio) -2 -1 0 1at 657.762 kb on + strand, within Pf6N2E2_582at 657.763 kb on - strand, within Pf6N2E2_582at 657.894 kb on + strand, within Pf6N2E2_582at 657.960 kb on + strand, within Pf6N2E2_582at 657.960 kb on + strand, within Pf6N2E2_582at 657.961 kb on - strand, within Pf6N2E2_582at 658.028 kb on + strand, within Pf6N2E2_582at 658.029 kb on - strand, within Pf6N2E2_582at 658.029 kb on - strand, within Pf6N2E2_582at 658.029 kb on - strand, within Pf6N2E2_582at 658.029 kb on - strand, within Pf6N2E2_582at 658.050 kb on + strand, within Pf6N2E2_582at 658.050 kb on + strand, within Pf6N2E2_582at 658.050 kb on + strand, within Pf6N2E2_582at 658.051 kb on - strand, within Pf6N2E2_582at 658.051 kb on - strand, within Pf6N2E2_582at 658.144 kb on - strand, within Pf6N2E2_582at 658.159 kb on - strand, within Pf6N2E2_582at 658.159 kb on - strand, within Pf6N2E2_582at 658.159 kb on - strand, within Pf6N2E2_582at 658.221 kb on + strand, within Pf6N2E2_582at 658.221 kb on + strand, within Pf6N2E2_582at 658.222 kb on - strand, within Pf6N2E2_582at 658.222 kb on - strand, within Pf6N2E2_582at 658.222 kb on - strand, within Pf6N2E2_582at 658.222 kb on - strand, within Pf6N2E2_582at 658.222 kb on - strand, within Pf6N2E2_582at 658.233 kb on + strand, within Pf6N2E2_582at 658.233 kb on + strand, within Pf6N2E2_582at 658.233 kb on + strand, within Pf6N2E2_582at 658.234 kb on - strand, within Pf6N2E2_582at 658.314 kb on + strand, within Pf6N2E2_582at 658.315 kb on - strand, within Pf6N2E2_582at 658.510 kb on + strandat 658.511 kb on - strandat 658.741 kb on + strand, within Pf6N2E2_583at 658.741 kb on + strand, within Pf6N2E2_583at 658.742 kb on - strand, within Pf6N2E2_583at 658.789 kb on + strand, within Pf6N2E2_583at 658.790 kb on - strand, within Pf6N2E2_583at 658.790 kb on - strand, within Pf6N2E2_583at 658.790 kb on - strand, within Pf6N2E2_583at 658.790 kb on - strand, within Pf6N2E2_583at 658.894 kb on + strand, within Pf6N2E2_583at 658.894 kb on + strand, within Pf6N2E2_583at 658.894 kb on + strand, within Pf6N2E2_583at 658.972 kb on + strand, within Pf6N2E2_583at 658.972 kb on + strand, within Pf6N2E2_583at 658.973 kb on - strand, within Pf6N2E2_583at 659.122 kb on + strand, within Pf6N2E2_583at 659.122 kb on + strand, within Pf6N2E2_583at 659.122 kb on + strand, within Pf6N2E2_583at 659.122 kb on + strand, within Pf6N2E2_583at 659.123 kb on - strand, within Pf6N2E2_583at 659.226 kb on + strand, within Pf6N2E2_583at 659.227 kb on - strand, within Pf6N2E2_583at 659.227 kb on - strand, within Pf6N2E2_583at 659.236 kb on + strand, within Pf6N2E2_583at 659.236 kb on + strand, within Pf6N2E2_583at 659.287 kb on + strand, within Pf6N2E2_583at 659.287 kb on + strand, within Pf6N2E2_583at 659.288 kb on - strand, within Pf6N2E2_583at 659.288 kb on - strand, within Pf6N2E2_583at 659.291 kb on + strand, within Pf6N2E2_583at 659.291 kb on + strand, within Pf6N2E2_583at 659.291 kb on + strand, within Pf6N2E2_583at 659.291 kb on + strand, within Pf6N2E2_583at 659.291 kb on + strand, within Pf6N2E2_583at 659.292 kb on - strand, within Pf6N2E2_583at 659.292 kb on - strand, within Pf6N2E2_583at 659.292 kb on - strand, within Pf6N2E2_583at 659.525 kb on + strandat 659.525 kb on + strandat 659.525 kb on + strandat 659.526 kb on - strandat 659.527 kb on + strandat 659.528 kb on - strandat 659.593 kb on + strandat 659.593 kb on + strandat 659.593 kb on + strandat 659.593 kb on + strandat 659.594 kb on - strandat 659.594 kb on - strandat 659.651 kb on + strandat 659.652 kb on - strandat 659.732 kb on + strand, within Pf6N2E2_584at 659.732 kb on + strand, within Pf6N2E2_584at 659.733 kb on - strand, within Pf6N2E2_584at 659.733 kb on - strand, within Pf6N2E2_584at 659.733 kb on - strandat 659.733 kb on - strand, within Pf6N2E2_584at 659.733 kb on - strand, within Pf6N2E2_584at 659.733 kb on - strand, within Pf6N2E2_584at 659.736 kb on - strand, within Pf6N2E2_584at 659.776 kb on + strand, within Pf6N2E2_584at 660.364 kb on + strand, within Pf6N2E2_584at 660.364 kb on + strand, within Pf6N2E2_584at 660.365 kb on - strand, within Pf6N2E2_584at 660.365 kb on - strand, within Pf6N2E2_584at 660.365 kb on - strand, within Pf6N2E2_584at 660.421 kb on + strand, within Pf6N2E2_584at 660.452 kb on + strand, within Pf6N2E2_584at 660.453 kb on - strand, within Pf6N2E2_584at 660.536 kb on + strand, within Pf6N2E2_584at 660.536 kb on + strand, within Pf6N2E2_584

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3
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657,762 + Pf6N2E2_582 0.31 +0.3
657,763 - Pf6N2E2_582 0.31 +0.1
657,894 + Pf6N2E2_582 0.44 +0.3
657,960 + Pf6N2E2_582 0.51 -1.7
657,960 + Pf6N2E2_582 0.51 -1.3
657,961 - Pf6N2E2_582 0.51 -0.6
658,028 + Pf6N2E2_582 0.57 +0.3
658,029 - Pf6N2E2_582 0.57 -0.7
658,029 - Pf6N2E2_582 0.57 +0.3
658,029 - Pf6N2E2_582 0.57 -0.7
658,029 - Pf6N2E2_582 0.57 -0.1
658,050 + Pf6N2E2_582 0.60 +0.3
658,050 + Pf6N2E2_582 0.60 +0.3
658,050 + Pf6N2E2_582 0.60 +0.3
658,051 - Pf6N2E2_582 0.60 +0.3
658,051 - Pf6N2E2_582 0.60 +0.3
658,144 - Pf6N2E2_582 0.69 -0.7
658,159 - Pf6N2E2_582 0.70 +1.3
658,159 - Pf6N2E2_582 0.70 +0.3
658,159 - Pf6N2E2_582 0.70 +0.3
658,221 + Pf6N2E2_582 0.76 -0.7
658,221 + Pf6N2E2_582 0.76 -0.7
658,222 - Pf6N2E2_582 0.76 -1.7
658,222 - Pf6N2E2_582 0.76 +0.3
658,222 - Pf6N2E2_582 0.76 -1.5
658,222 - Pf6N2E2_582 0.76 +0.3
658,222 - Pf6N2E2_582 0.76 +0.0
658,233 + Pf6N2E2_582 0.77 +0.3
658,233 + Pf6N2E2_582 0.77 -0.1
658,233 + Pf6N2E2_582 0.77 -0.1
658,234 - Pf6N2E2_582 0.78 +0.3
658,314 + Pf6N2E2_582 0.85 -2.0
658,315 - Pf6N2E2_582 0.85 -0.1
658,510 + +0.3
658,511 - +0.1
658,741 + Pf6N2E2_583 0.26 -1.3
658,741 + Pf6N2E2_583 0.26 +0.3
658,742 - Pf6N2E2_583 0.26 +0.3
658,789 + Pf6N2E2_583 0.30 +0.3
658,790 - Pf6N2E2_583 0.30 -0.7
658,790 - Pf6N2E2_583 0.30 +0.4
658,790 - Pf6N2E2_583 0.30 -0.7
658,790 - Pf6N2E2_583 0.30 -0.7
658,894 + Pf6N2E2_583 0.40 -0.2
658,894 + Pf6N2E2_583 0.40 -0.8
658,894 + Pf6N2E2_583 0.40 +0.3
658,972 + Pf6N2E2_583 0.47 -0.4
658,972 + Pf6N2E2_583 0.47 -0.0
658,973 - Pf6N2E2_583 0.47 +0.3
659,122 + Pf6N2E2_583 0.61 -1.3
659,122 + Pf6N2E2_583 0.61 +0.8
659,122 + Pf6N2E2_583 0.61 +0.3
659,122 + Pf6N2E2_583 0.61 +1.0
659,123 - Pf6N2E2_583 0.61 +0.3
659,226 + Pf6N2E2_583 0.71 +0.3
659,227 - Pf6N2E2_583 0.71 +0.3
659,227 - Pf6N2E2_583 0.71 -0.8
659,236 + Pf6N2E2_583 0.72 -0.7
659,236 + Pf6N2E2_583 0.72 +0.2
659,287 + Pf6N2E2_583 0.77 +0.3
659,287 + Pf6N2E2_583 0.77 -0.4
659,288 - Pf6N2E2_583 0.77 +0.3
659,288 - Pf6N2E2_583 0.77 +0.3
659,291 + Pf6N2E2_583 0.77 -0.7
659,291 + Pf6N2E2_583 0.77 +0.3
659,291 + Pf6N2E2_583 0.77 +0.3
659,291 + Pf6N2E2_583 0.77 -0.7
659,291 + Pf6N2E2_583 0.77 +0.3
659,292 - Pf6N2E2_583 0.77 -0.7
659,292 - Pf6N2E2_583 0.77 -0.7
659,292 - Pf6N2E2_583 0.77 +0.7
659,525 + +0.3
659,525 + +0.3
659,525 + +0.9
659,526 - +0.3
659,527 + +0.3
659,528 - +0.3
659,593 + +0.3
659,593 + +0.3
659,593 + -0.7
659,593 + +1.3
659,594 - +0.3
659,594 - +1.3
659,651 + -0.2
659,652 - -0.7
659,732 + Pf6N2E2_584 0.10 -0.5
659,732 + Pf6N2E2_584 0.10 +0.3
659,733 - Pf6N2E2_584 0.10 +0.3
659,733 - Pf6N2E2_584 0.10 +0.3
659,733 - +0.3
659,733 - Pf6N2E2_584 0.10 +0.3
659,733 - Pf6N2E2_584 0.10 -0.7
659,733 - Pf6N2E2_584 0.10 +0.3
659,736 - Pf6N2E2_584 0.10 +0.3
659,776 + Pf6N2E2_584 0.13 +0.3
660,364 + Pf6N2E2_584 0.44 -0.7
660,364 + Pf6N2E2_584 0.44 +0.3
660,365 - Pf6N2E2_584 0.44 +0.3
660,365 - Pf6N2E2_584 0.44 +0.3
660,365 - Pf6N2E2_584 0.44 +0.3
660,421 + Pf6N2E2_584 0.47 +0.3
660,452 + Pf6N2E2_584 0.49 +0.3
660,453 - Pf6N2E2_584 0.49 +0.3
660,536 + Pf6N2E2_584 0.54 -1.0
660,536 + Pf6N2E2_584 0.54 +0.3

Or see this region's nucleotide sequence