Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5338

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
6,131,906	+				-0.6
6,131,908	+				-1.2
6,131,908	+				+0.4
6,131,908	+				-1.2
6,131,909	-				-2.2
6,131,909	-				-0.6
6,131,911	+				-0.6
6,131,911	+				-0.6
6,131,911	+				-0.6
6,131,912	-				-1.6
6,131,939	+				-0.6
6,131,939	+				-0.6
6,131,943	+				+0.4
6,131,943	+				+0.4
6,131,943	+				-0.6
6,131,944	-				-1.6
6,131,944	-				-0.8
6,131,944	-				-0.6
6,131,991	+				+0.4
6,131,992	-				-4.8
6,132,005	+				+0.4
6,132,009	+				-2.2
6,132,009	+				-3.0
6,132,010	-				-4.8
6,132,010	-				-6.9
6,132,012	+				-2.8
6,132,013	-				-5.3
6,132,013	-				-6.3
6,132,025	+				-2.1
6,132,025	+				-1.9
6,132,025	+				-0.6
6,132,370	+		Pf6N2E2_5337	0.53	-5.4
6,132,370	+				-3.6
6,132,370	+		Pf6N2E2_5337	0.53	-6.1
6,132,370	+		Pf6N2E2_5337	0.53	-6.2
6,132,370	+		Pf6N2E2_5337	0.53	-5.4
6,132,371	-		Pf6N2E2_5337	0.53	-6.9
6,132,371	-		Pf6N2E2_5337	0.53	-7.6
6,132,429	+		Pf6N2E2_5337	0.62	-5.3
6,132,430	-		Pf6N2E2_5337	0.63	-6.2
6,132,505	+		Pf6N2E2_5337	0.75	-5.0
6,132,506	-		Pf6N2E2_5337	0.75	-5.3
6,132,553	+		Pf6N2E2_5337	0.83	-4.7
6,132,553	+		Pf6N2E2_5337	0.83	-4.5
6,132,553	+		Pf6N2E2_5337	0.83	-3.6
6,132,554	-				-6.4
6,132,601	+				-6.3
6,132,602	-				-5.8
6,132,602	-				-6.9
6,132,723	+				-5.0
6,132,724	-				-8.7
6,132,727	-				-5.9
6,132,727	-				-5.6
6,132,753	+				-6.2
6,132,753	+				-6.3
6,132,825	+		Pf6N2E2_5338	0.14	-5.2
6,132,825	+		Pf6N2E2_5338	0.14	-5.7
6,132,825	+		Pf6N2E2_5338	0.14	-5.6
6,132,825	+		Pf6N2E2_5338	0.14	-7.1
6,132,825	+		Pf6N2E2_5338	0.14	-6.1
6,132,826	-		Pf6N2E2_5338	0.14	-7.3
6,132,826	-		Pf6N2E2_5338	0.14	+0.4
6,132,864	+		Pf6N2E2_5338	0.18	-5.2
6,132,864	+		Pf6N2E2_5338	0.18	-4.3
6,132,864	+		Pf6N2E2_5338	0.18	-5.6
6,132,864	+		Pf6N2E2_5338	0.18	-4.9
6,132,864	+		Pf6N2E2_5338	0.18	-5.2
6,132,865	-		Pf6N2E2_5338	0.18	-5.8
6,132,865	-		Pf6N2E2_5338	0.18	-6.4
6,132,972	+		Pf6N2E2_5338	0.26	-4.0
6,132,981	+		Pf6N2E2_5338	0.27	-5.4
6,132,981	+		Pf6N2E2_5338	0.27	-5.6
6,132,982	-		Pf6N2E2_5338	0.27	-5.5
6,133,060	-		Pf6N2E2_5338	0.34	-6.1
6,133,170	+		Pf6N2E2_5338	0.43	-5.7
6,133,171	-		Pf6N2E2_5338	0.43	-6.9
6,133,171	-		Pf6N2E2_5338	0.43	-6.9
6,133,365	+		Pf6N2E2_5338	0.59	-6.5
6,133,365	+		Pf6N2E2_5338	0.59	-4.9
6,133,365	+		Pf6N2E2_5338	0.59	-5.6
6,133,366	-		Pf6N2E2_5338	0.59	-6.1
6,133,368	+		Pf6N2E2_5338	0.59	-3.5
6,133,368	+		Pf6N2E2_5338	0.59	-5.7
6,133,382	+		Pf6N2E2_5338	0.60	-5.1
6,133,452	+		Pf6N2E2_5338	0.66	-5.9
6,133,452	+		Pf6N2E2_5338	0.66	-5.4
6,133,452	+		Pf6N2E2_5338	0.66	-4.6
6,133,453	-		Pf6N2E2_5338	0.66	-5.3
6,133,453	-		Pf6N2E2_5338	0.66	-6.9
6,133,453	-		Pf6N2E2_5338	0.66	-5.1
6,133,453	-		Pf6N2E2_5338	0.66	-6.6
6,133,453	-		Pf6N2E2_5338	0.66	-6.5
6,133,453	-		Pf6N2E2_5338	0.66	-6.1
6,133,524	+		Pf6N2E2_5338	0.72	-4.1
6,133,524	+		Pf6N2E2_5338	0.72	-5.5
6,133,540	-		Pf6N2E2_5338	0.73	-6.1
6,133,656	+		Pf6N2E2_5338	0.83	-4.7
6,133,782	+				-4.4
6,133,782	+				-5.1
6,133,791	+				-5.5
6,133,812	+				-2.7
6,133,905	+				-5.2
6,133,905	+				-6.6
6,133,996	+		Pf6N2E2_5339	0.17	-6.3
6,133,997	-		Pf6N2E2_5339	0.17	-5.0
6,134,009	+		Pf6N2E2_5339	0.19	-6.4
6,134,009	+		Pf6N2E2_5339	0.19	-4.8
6,134,009	+		Pf6N2E2_5339	0.19	-5.0
6,134,009	+		Pf6N2E2_5339	0.19	-4.1
6,134,009	+		Pf6N2E2_5339	0.19	-6.8
6,134,231	+		Pf6N2E2_5339	0.47	-5.9
6,134,231	+		Pf6N2E2_5339	0.47	-5.9
6,134,231	+		Pf6N2E2_5339	0.47	-5.4
6,134,232	-		Pf6N2E2_5339	0.47	-5.0
6,134,252	+		Pf6N2E2_5339	0.50	-5.5
6,134,252	+		Pf6N2E2_5339	0.50	-5.4
6,134,252	+		Pf6N2E2_5339	0.50	-4.1
6,134,252	+		Pf6N2E2_5339	0.50	-5.5
6,134,252	+		Pf6N2E2_5339	0.50	-5.2
6,134,253	-		Pf6N2E2_5339	0.50	-4.8
6,134,253	-		Pf6N2E2_5339	0.50	-8.6
6,134,319	+		Pf6N2E2_5339	0.58	-5.3
6,134,319	+		Pf6N2E2_5339	0.58	-6.3
6,134,349	+		Pf6N2E2_5339	0.62	-4.6
6,134,448	+		Pf6N2E2_5339	0.75	-5.3
6,134,448	+		Pf6N2E2_5339	0.75	-7.0
6,134,448	+		Pf6N2E2_5339	0.75	-5.2
6,134,449	-		Pf6N2E2_5339	0.75	-5.6
6,134,449	-		Pf6N2E2_5339	0.75	-5.4
6,134,458	+		Pf6N2E2_5339	0.76	-5.6
6,134,567	+				-1.2
6,134,567	+				-4.1
6,134,567	+				-4.2
6,134,567	+				-5.0
6,134,567	+				-5.5
6,134,567	+				-5.9
6,134,567	+				-5.2
6,134,567	+				-6.2
6,134,567	+				-5.8
6,134,567	+				-4.6
6,134,568	-				-3.3
6,134,568	-				-7.1
6,134,568	-				-8.2
6,134,568	-				-6.9
6,134,568	-				-6.7
6,134,571	+				-5.2
6,134,571	+				-5.3
6,134,571	+				-5.0
6,134,571	+				-3.6
6,134,571	+				-3.7
6,134,571	+				-5.4
6,134,571	+				-4.1
6,134,571	+				-4.8
6,134,571	+				-5.5
6,134,571	+				-5.6
6,134,571	+				-6.7
6,134,571	+				-6.7
6,134,571	+				-4.5
6,134,571	+				-6.8
6,134,571	+				-5.5
6,134,571	+				-4.6
6,134,572	-				-4.6
6,134,572	-				-0.6
6,134,572	-				+0.4
6,134,572	-				+0.4
6,134,572	-				+0.4
6,134,579	+				-6.9
6,134,580	-				-6.2
6,134,598	+				+0.4
6,134,624	+				-1.9
6,134,645	+				-0.7
6,134,653	+				-1.1
6,134,653	+				+0.8
6,134,653	+				+0.4
6,134,693	+				+0.4
6,134,693	+				-0.5
6,134,698	+				-1.0
6,134,698	+				-0.9
6,134,698	+				-0.6
6,134,698	+				-1.9
6,134,698	+				-0.4