Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5262

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
6,056,786	+		Pf6N2E2_5260	0.83	-1.6
6,056,786	+		Pf6N2E2_5260	0.83	+0.4
6,056,787	-		Pf6N2E2_5260	0.84	-0.9
6,056,787	-		Pf6N2E2_5260	0.84	-0.8
6,056,856	-		Pf6N2E2_5260	0.87	-0.6
6,057,060	+				-0.1
6,057,117	+				-0.2
6,057,169	+				-0.6
6,057,169	+				+0.4
6,057,169	+				+0.4
6,057,169	+				+0.4
6,057,169	+				+0.4
6,057,169	+				+0.4
6,057,169	+				-0.6
6,057,169	+				-0.6
6,057,170	-				-0.3
6,057,170	-				-0.2
6,057,170	-				-0.0
6,057,170	-				-0.7
6,057,170	-				+0.4
6,057,170	-				-0.6
6,057,170	-				-0.6
6,057,183	+				+0.4
6,057,183	+				+0.4
6,057,183	+				-0.6
6,057,184	-				+0.4
6,057,184	-				-0.6
6,057,184	-				-2.4
6,057,257	+		Pf6N2E2_5261	0.40	-0.5
6,057,458	+				+0.4
6,057,458	+				-0.6
6,057,458	+				-0.7
6,057,459	-				+0.4
6,057,481	+				+0.6
6,057,482	-				-0.6
6,057,482	-				-0.3
6,057,518	+				-1.2
6,057,518	+				-0.5
6,057,519	-				-1.6
6,057,537	+				+0.4
6,057,537	+				-0.6
6,057,538	-				+0.4
6,057,538	-				-0.6
6,057,539	+				-0.2
6,057,540	-				-1.0
6,057,601	-		Pf6N2E2_5262	0.21	+0.4
6,057,702	+		Pf6N2E2_5262	0.41	-2.6
6,057,702	+		Pf6N2E2_5262	0.41	-0.6
6,057,703	-		Pf6N2E2_5262	0.42	-0.6
6,057,997	-				+0.4
6,058,044	+				-0.6
6,058,058	+				+0.2
6,058,058	+				-0.6
6,058,059	-				+0.4
6,058,059	-				-0.7
6,058,128	+				-0.3
6,058,128	+				+0.4
6,058,129	-				+0.4
6,058,232	-		Pf6N2E2_5263	0.26	-1.2
6,058,253	-		Pf6N2E2_5263	0.30	-0.6
6,058,253	-		Pf6N2E2_5263	0.30	+0.4
6,058,253	-		Pf6N2E2_5263	0.30	-0.0
6,058,261	+		Pf6N2E2_5263	0.32	-1.2
6,058,261	+		Pf6N2E2_5263	0.32	-0.6
6,058,261	+		Pf6N2E2_5263	0.32	+0.4
6,058,262	-		Pf6N2E2_5263	0.32	-1.2
6,058,262	-		Pf6N2E2_5263	0.32	-0.6
6,058,262	-		Pf6N2E2_5263	0.32	-0.6
6,058,262	-		Pf6N2E2_5263	0.32	+0.4
6,058,262	-		Pf6N2E2_5263	0.32	+0.4
6,058,262	-		Pf6N2E2_5263	0.32	+0.4
6,058,262	-		Pf6N2E2_5263	0.32	-1.2
6,058,262	-		Pf6N2E2_5263	0.32	+0.4
6,058,470	+		Pf6N2E2_5263	0.75	-0.3
6,058,471	-		Pf6N2E2_5263	0.75	+0.4
6,058,471	-		Pf6N2E2_5263	0.75	-0.6
6,058,672	+				-1.2
6,058,690	+				+0.4
6,058,807	+				-0.8
6,058,808	-				+0.4
6,058,808	-				-0.6
6,058,808	-				+0.7
6,058,815	-				-0.6
6,058,830	+		Pf6N2E2_5264	0.18	+0.4
6,058,837	-		Pf6N2E2_5264	0.23	-1.2
6,058,859	+		Pf6N2E2_5264	0.39	-0.6
6,058,859	+		Pf6N2E2_5264	0.39	-0.6
6,058,859	+		Pf6N2E2_5264	0.39	+0.4
6,058,859	+		Pf6N2E2_5264	0.39	-1.2
6,058,860	-		Pf6N2E2_5264	0.40	-1.1
6,058,860	-		Pf6N2E2_5264	0.40	+0.4
6,058,860	-		Pf6N2E2_5264	0.40	-1.2
6,058,863	-		Pf6N2E2_5264	0.42	-1.2
6,058,915	+				-0.8
6,058,916	-				-1.2
6,058,916	-				+0.4