Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5178

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
5,965,867	+		Pf6N2E2_5177	0.33	-0.6
5,965,867	+		Pf6N2E2_5177	0.33	+0.1
5,965,867	+		Pf6N2E2_5177	0.33	+0.4
5,965,867	+		Pf6N2E2_5177	0.33	-0.6
5,965,867	+		Pf6N2E2_5177	0.33	-1.6
5,965,868	-		Pf6N2E2_5177	0.33	+0.4
5,965,988	-		Pf6N2E2_5177	0.45	-1.9
5,965,988	-		Pf6N2E2_5177	0.45	-1.2
5,965,988	-		Pf6N2E2_5177	0.45	-1.2
5,966,030	-		Pf6N2E2_5177	0.49	+0.4
5,966,055	+		Pf6N2E2_5177	0.52	-0.2
5,966,182	+		Pf6N2E2_5177	0.64	+0.4
5,966,200	+		Pf6N2E2_5177	0.66	-0.6
5,966,200	+		Pf6N2E2_5177	0.66	-1.2
5,966,200	+		Pf6N2E2_5177	0.66	-0.8
5,966,200	+		Pf6N2E2_5177	0.66	-1.9
5,966,201	-		Pf6N2E2_5177	0.66	+0.4
5,966,245	+		Pf6N2E2_5177	0.70	+0.1
5,966,245	+		Pf6N2E2_5177	0.70	+0.4
5,966,245	+		Pf6N2E2_5177	0.70	-1.2
5,966,245	+		Pf6N2E2_5177	0.70	-1.6
5,966,245	+		Pf6N2E2_5177	0.70	+0.4
5,966,245	+		Pf6N2E2_5177	0.70	-0.5
5,966,245	+		Pf6N2E2_5177	0.70	+0.4
5,966,245	+		Pf6N2E2_5177	0.70	-0.4
5,966,246	-		Pf6N2E2_5177	0.70	-0.6
5,966,246	-		Pf6N2E2_5177	0.70	+0.4
5,966,246	-		Pf6N2E2_5177	0.70	-0.6
5,966,272	+		Pf6N2E2_5177	0.73	+0.4
5,966,272	+		Pf6N2E2_5177	0.73	-0.5
5,966,273	-		Pf6N2E2_5177	0.73	-0.6
5,966,273	-		Pf6N2E2_5177	0.73	-1.2
5,966,273	-		Pf6N2E2_5177	0.73	-0.0
5,966,305	+		Pf6N2E2_5177	0.76	-0.2
5,966,386	+		Pf6N2E2_5177	0.84	-1.1
5,966,545	+				+0.4
5,966,545	+				+0.4
5,966,545	+				-0.6
5,966,546	-				+0.4
5,966,546	-				-1.2
5,966,546	-				-1.2
5,966,546	-				-1.2
5,966,546	-				-0.8
5,966,546	-				-0.6
5,966,615	+				-0.6
5,966,616	-				+0.4
5,966,685	+				+0.4
5,966,686	-				-0.6
5,966,686	-				-1.2
5,966,818	-		Pf6N2E2_5178	0.15	-0.6
5,967,140	-		Pf6N2E2_5178	0.53	-2.2
5,967,143	+		Pf6N2E2_5178	0.53	-1.2
5,967,144	-		Pf6N2E2_5178	0.53	-0.6
5,967,279	-		Pf6N2E2_5178	0.69	+0.4
5,967,362	+		Pf6N2E2_5178	0.79	+0.4
5,967,512	+				+0.4
5,967,513	-				-0.2
5,967,548	+				+0.4
5,967,548	+				+0.4
5,967,548	+				+0.4
5,967,565	+				-0.6
5,967,577	+				-0.8
5,967,577	+				-0.7
5,967,577	+				+0.4
5,967,577	+				-1.6
5,967,599	+				+0.4
5,967,631	+				-1.6
5,967,631	+				+0.4
5,967,632	-				-1.2
5,967,677	+				+0.4
5,967,677	+				+0.4
5,967,678	-				-0.9
5,967,678	-				-1.9
5,967,678	-				-0.6
5,967,678	-				-1.2
5,967,678	-				-1.8
5,967,682	-				-0.6
5,967,682	-				-0.3
5,967,682	-				-0.6
5,967,890	+		Pf6N2E2_5179	0.27	-1.9
5,967,890	+		Pf6N2E2_5179	0.27	+0.4
5,967,891	-		Pf6N2E2_5179	0.27	-1.9
5,967,891	-		Pf6N2E2_5179	0.27	+0.4
5,967,891	-		Pf6N2E2_5179	0.27	+0.4
5,967,891	-		Pf6N2E2_5179	0.27	+0.4
5,967,902	+		Pf6N2E2_5179	0.28	-3.5
5,967,902	+		Pf6N2E2_5179	0.28	+1.7
5,967,903	-		Pf6N2E2_5179	0.29	+0.4
5,967,903	-		Pf6N2E2_5179	0.29	-0.9
5,967,903	-		Pf6N2E2_5179	0.29	-1.0
5,967,903	-		Pf6N2E2_5179	0.29	-1.6
5,968,034	+		Pf6N2E2_5179	0.41	+0.4
5,968,034	+		Pf6N2E2_5179	0.41	+1.0
5,968,051	+		Pf6N2E2_5179	0.43	+0.4
5,968,051	+		Pf6N2E2_5179	0.43	+0.4
5,968,051	+		Pf6N2E2_5179	0.43	+0.4
5,968,051	+		Pf6N2E2_5179	0.43	-0.3
5,968,052	-		Pf6N2E2_5179	0.43	-0.6
5,968,052	-		Pf6N2E2_5179	0.43	-1.2
5,968,052	-		Pf6N2E2_5179	0.43	+0.4
5,968,055	+		Pf6N2E2_5179	0.43	+0.4
5,968,056	-		Pf6N2E2_5179	0.44	-0.9
5,968,157	+		Pf6N2E2_5179	0.54	+0.4
5,968,157	+		Pf6N2E2_5179	0.54	+0.4
5,968,157	+		Pf6N2E2_5179	0.54	+0.4
5,968,157	+		Pf6N2E2_5179	0.54	+0.4
5,968,157	+		Pf6N2E2_5179	0.54	-0.6
5,968,157	+		Pf6N2E2_5179	0.54	+0.4
5,968,157	+		Pf6N2E2_5179	0.54	+0.4
5,968,157	+		Pf6N2E2_5179	0.54	-0.6
5,968,158	-		Pf6N2E2_5179	0.54	+0.4
5,968,158	-		Pf6N2E2_5179	0.54	+0.4
5,968,158	-		Pf6N2E2_5179	0.54	-0.1
5,968,158	-		Pf6N2E2_5179	0.54	-0.6
5,968,235	+		Pf6N2E2_5179	0.61	+0.4
5,968,236	-		Pf6N2E2_5179	0.61	-0.6
5,968,236	-		Pf6N2E2_5179	0.61	-0.6
5,968,298	+		Pf6N2E2_5179	0.67	-0.7
5,968,299	-		Pf6N2E2_5179	0.68	-0.3
5,968,299	-		Pf6N2E2_5179	0.68	+1.2
5,968,358	+		Pf6N2E2_5179	0.73	-1.8
5,968,390	+		Pf6N2E2_5179	0.77	-0.6
5,968,448	+		Pf6N2E2_5179	0.82	+0.4