Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4986 and Pf6N2E2_4987 are separated by 102 nucleotides Pf6N2E2_4987 and Pf6N2E2_4988 are separated by 327 nucleotides Pf6N2E2_4988 and Pf6N2E2_4989 overlap by 4 nucleotides
Pf6N2E2_4986 - MORN repeat family protein, at 5,752,528 to 5,754,246
_4986
Pf6N2E2_4987 - MaoC-like domain protein, at 5,754,349 to 5,754,804
_4987
Pf6N2E2_4988 - Antiholin-like protein LrgA, at 5,755,132 to 5,755,497
_4988
Pf6N2E2_4989 - LrgA-associated membrane protein LrgB, at 5,755,494 to 5,756,210
_4989
Position (kb) 5754
5755 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5753.432 kb on + strand, within Pf6N2E2_4986 at 5753.432 kb on + strand, within Pf6N2E2_4986 at 5753.432 kb on + strand, within Pf6N2E2_4986 at 5753.432 kb on + strand, within Pf6N2E2_4986 at 5753.433 kb on - strand, within Pf6N2E2_4986 at 5753.528 kb on + strand, within Pf6N2E2_4986 at 5753.529 kb on - strand, within Pf6N2E2_4986 at 5753.666 kb on + strand, within Pf6N2E2_4986 at 5753.666 kb on + strand, within Pf6N2E2_4986 at 5753.666 kb on + strand, within Pf6N2E2_4986 at 5753.667 kb on - strand, within Pf6N2E2_4986 at 5753.667 kb on - strand, within Pf6N2E2_4986 at 5753.667 kb on - strand, within Pf6N2E2_4986 at 5753.667 kb on - strand, within Pf6N2E2_4986 at 5753.873 kb on + strand, within Pf6N2E2_4986 at 5753.873 kb on + strand, within Pf6N2E2_4986 at 5753.939 kb on + strand, within Pf6N2E2_4986 at 5753.939 kb on + strand, within Pf6N2E2_4986 at 5753.939 kb on + strand, within Pf6N2E2_4986 at 5753.940 kb on - strand, within Pf6N2E2_4986 at 5753.940 kb on - strand, within Pf6N2E2_4986 at 5753.940 kb on - strand, within Pf6N2E2_4986 at 5754.005 kb on + strand, within Pf6N2E2_4986 at 5754.074 kb on + strand, within Pf6N2E2_4986 at 5754.075 kb on - strand at 5754.220 kb on + strand at 5754.221 kb on - strand at 5754.238 kb on + strand at 5754.238 kb on + strand at 5754.238 kb on + strand at 5754.238 kb on + strand at 5754.238 kb on + strand at 5754.238 kb on + strand at 5754.238 kb on + strand at 5754.238 kb on + strand at 5754.238 kb on + strand at 5754.239 kb on - strand at 5754.239 kb on - strand at 5754.239 kb on - strand at 5754.275 kb on + strand at 5754.276 kb on - strand at 5754.276 kb on - strand at 5754.276 kb on - strand at 5754.276 kb on - strand at 5754.276 kb on - strand at 5754.286 kb on + strand at 5754.286 kb on + strand at 5754.287 kb on - strand at 5754.287 kb on - strand at 5754.287 kb on - strand at 5754.301 kb on + strand at 5754.301 kb on + strand at 5754.302 kb on - strand at 5754.302 kb on - strand at 5754.302 kb on - strand at 5754.302 kb on - strand at 5754.344 kb on + strand at 5754.345 kb on - strand at 5754.345 kb on - strand at 5754.345 kb on - strand at 5754.351 kb on - strand at 5754.351 kb on - strand at 5754.383 kb on + strand at 5754.383 kb on + strand at 5754.384 kb on - strand at 5754.384 kb on - strand at 5754.384 kb on - strand at 5754.540 kb on - strand, within Pf6N2E2_4987 at 5754.770 kb on + strand at 5754.771 kb on - strand at 5754.771 kb on - strand at 5754.771 kb on - strand at 5754.771 kb on - strand at 5754.797 kb on + strand at 5754.797 kb on + strand at 5754.798 kb on - strand at 5754.798 kb on - strand at 5754.798 kb on - strand at 5754.798 kb on - strand at 5754.875 kb on + strand at 5754.875 kb on + strand at 5754.876 kb on - strand at 5754.876 kb on - strand at 5754.876 kb on - strand at 5754.876 kb on - strand at 5754.896 kb on + strand at 5754.896 kb on + strand at 5754.896 kb on + strand at 5754.896 kb on + strand at 5754.896 kb on + strand at 5754.896 kb on + strand at 5754.896 kb on + strand at 5754.896 kb on + strand at 5754.896 kb on + strand at 5754.896 kb on + strand at 5754.897 kb on - strand at 5754.918 kb on + strand at 5754.949 kb on + strand at 5754.949 kb on + strand at 5754.949 kb on + strand at 5754.949 kb on + strand at 5754.949 kb on + strand at 5754.949 kb on + strand at 5754.949 kb on + strand at 5754.949 kb on + strand at 5754.949 kb on + strand at 5754.949 kb on + strand at 5754.949 kb on + strand at 5754.949 kb on + strand at 5754.949 kb on + strand at 5754.949 kb on + strand at 5754.949 kb on + strand at 5754.949 kb on + strand at 5754.950 kb on - strand at 5754.950 kb on - strand at 5754.950 kb on - strand at 5754.950 kb on - strand at 5754.950 kb on - strand at 5754.950 kb on - strand at 5754.950 kb on - strand at 5754.950 kb on - strand at 5754.950 kb on - strand at 5754.950 kb on - strand at 5754.950 kb on - strand at 5754.950 kb on - strand at 5754.950 kb on - strand at 5754.950 kb on - strand at 5754.950 kb on - strand at 5754.950 kb on - strand at 5754.950 kb on - strand at 5754.950 kb on - strand at 5754.950 kb on - strand at 5754.950 kb on - strand at 5754.951 kb on + strand at 5754.951 kb on + strand at 5754.951 kb on + strand at 5754.951 kb on + strand at 5754.952 kb on - strand at 5754.952 kb on - strand at 5754.952 kb on - strand at 5755.029 kb on - strand at 5755.312 kb on + strand, within Pf6N2E2_4988 at 5755.357 kb on + strand, within Pf6N2E2_4988 at 5755.357 kb on + strand, within Pf6N2E2_4988 at 5755.358 kb on - strand, within Pf6N2E2_4988 at 5755.358 kb on - strand, within Pf6N2E2_4988 at 5755.358 kb on - strand, within Pf6N2E2_4988 at 5755.358 kb on - strand, within Pf6N2E2_4988 at 5755.358 kb on - strand, within Pf6N2E2_4988 at 5755.573 kb on - strand, within Pf6N2E2_4989 at 5755.759 kb on - strand, within Pf6N2E2_4989 at 5755.759 kb on - strand, within Pf6N2E2_4989
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 5,753,432 + Pf6N2E2_4986 0.53 -0.6 5,753,432 + Pf6N2E2_4986 0.53 -1.1 5,753,432 + Pf6N2E2_4986 0.53 -1.1 5,753,432 + Pf6N2E2_4986 0.53 -0.6 5,753,433 - Pf6N2E2_4986 0.53 +0.4 5,753,528 + Pf6N2E2_4986 0.58 -0.6 5,753,529 - Pf6N2E2_4986 0.58 -0.6 5,753,666 + Pf6N2E2_4986 0.66 +0.4 5,753,666 + Pf6N2E2_4986 0.66 -1.1 5,753,666 + Pf6N2E2_4986 0.66 +0.4 5,753,667 - Pf6N2E2_4986 0.66 +0.4 5,753,667 - Pf6N2E2_4986 0.66 +0.0 5,753,667 - Pf6N2E2_4986 0.66 +0.4 5,753,667 - Pf6N2E2_4986 0.66 +0.4 5,753,873 + Pf6N2E2_4986 0.78 -1.1 5,753,873 + Pf6N2E2_4986 0.78 -0.6 5,753,939 + Pf6N2E2_4986 0.82 +0.4 5,753,939 + Pf6N2E2_4986 0.82 -1.2 5,753,939 + Pf6N2E2_4986 0.82 +1.8 5,753,940 - Pf6N2E2_4986 0.82 +0.4 5,753,940 - Pf6N2E2_4986 0.82 -1.1 5,753,940 - Pf6N2E2_4986 0.82 -1.6 5,754,005 + Pf6N2E2_4986 0.86 -0.1 5,754,074 + Pf6N2E2_4986 0.90 -0.5 5,754,075 - +0.4 5,754,220 + +0.4 5,754,221 - -0.8 5,754,238 + -0.7 5,754,238 + -0.7 5,754,238 + -0.6 5,754,238 + +0.4 5,754,238 + -1.2 5,754,238 + -0.6 5,754,238 + +0.4 5,754,238 + +0.4 5,754,238 + -0.4 5,754,239 - +0.4 5,754,239 - -1.6 5,754,239 - -0.7 5,754,275 + -1.1 5,754,276 - -0.6 5,754,276 - +0.4 5,754,276 - -0.6 5,754,276 - -1.2 5,754,276 - -0.4 5,754,286 + +0.4 5,754,286 + -0.7 5,754,287 - +0.1 5,754,287 - -1.2 5,754,287 - -0.6 5,754,301 + -0.6 5,754,301 + +0.4 5,754,302 - +0.4 5,754,302 - +1.4 5,754,302 - -0.3 5,754,302 - -1.2 5,754,344 + +0.4 5,754,345 - -1.2 5,754,345 - -0.8 5,754,345 - -0.6 5,754,351 - -0.6 5,754,351 - -0.6 5,754,383 + -0.0 5,754,383 + -0.6 5,754,384 - +0.4 5,754,384 - -0.9 5,754,384 - -0.7 5,754,540 - Pf6N2E2_4987 0.42 -0.6 5,754,770 + -1.2 5,754,771 - -0.6 5,754,771 - +0.2 5,754,771 - -0.6 5,754,771 - -0.6 5,754,797 + -1.2 5,754,797 + -0.5 5,754,798 - +0.4 5,754,798 - -1.2 5,754,798 - -1.9 5,754,798 - +0.4 5,754,875 + +1.4 5,754,875 + -1.6 5,754,876 - -0.4 5,754,876 - +0.0 5,754,876 - +0.4 5,754,876 - -1.2 5,754,896 + -0.6 5,754,896 + +0.4 5,754,896 + -0.6 5,754,896 + -1.9 5,754,896 + +0.4 5,754,896 + -1.7 5,754,896 + -1.2 5,754,896 + -0.6 5,754,896 + -0.6 5,754,896 + -1.2 5,754,897 - -0.6 5,754,918 + -0.6 5,754,949 + -1.2 5,754,949 + -1.7 5,754,949 + -0.1 5,754,949 + -0.6 5,754,949 + +0.2 5,754,949 + -0.6 5,754,949 + +0.4 5,754,949 + -0.6 5,754,949 + -2.6 5,754,949 + -0.6 5,754,949 + -1.2 5,754,949 + -2.2 5,754,949 + -0.7 5,754,949 + -1.0 5,754,949 + -0.7 5,754,949 + +0.4 5,754,950 - +0.4 5,754,950 - -2.1 5,754,950 - -1.2 5,754,950 - -0.6 5,754,950 - +0.4 5,754,950 - -0.6 5,754,950 - -1.6 5,754,950 - -1.2 5,754,950 - +0.4 5,754,950 - +0.4 5,754,950 - -1.2 5,754,950 - -1.2 5,754,950 - +0.4 5,754,950 - -1.2 5,754,950 - -0.6 5,754,950 - -1.6 5,754,950 - -0.6 5,754,950 - -1.2 5,754,950 - -0.3 5,754,950 - -0.5 5,754,951 + -0.6 5,754,951 + -0.6 5,754,951 + -0.7 5,754,951 + +0.4 5,754,952 - -0.6 5,754,952 - -0.6 5,754,952 - -0.1 5,755,029 - +0.4 5,755,312 + Pf6N2E2_4988 0.49 -0.2 5,755,357 + Pf6N2E2_4988 0.61 +1.6 5,755,357 + Pf6N2E2_4988 0.61 +0.4 5,755,358 - Pf6N2E2_4988 0.62 -0.7 5,755,358 - Pf6N2E2_4988 0.62 -0.6 5,755,358 - Pf6N2E2_4988 0.62 -0.6 5,755,358 - Pf6N2E2_4988 0.62 -0.6 5,755,358 - Pf6N2E2_4988 0.62 -1.2 5,755,573 - Pf6N2E2_4989 0.11 -0.6 5,755,759 - Pf6N2E2_4989 0.37 +1.0 5,755,759 - Pf6N2E2_4989 0.37 -0.7
Or see this region's nucleotide sequence