Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4912

Experiment: Ying_AminoAcid20 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4911 and Pf6N2E2_4912 are separated by 22 nucleotidesPf6N2E2_4912 and Pf6N2E2_4913 are separated by 136 nucleotidesPf6N2E2_4913 and Pf6N2E2_4914 are separated by 120 nucleotides Pf6N2E2_4911 - ABC-type antimicrobial peptide transport system, permease component, at 5,667,305 to 5,668,549 _4911 Pf6N2E2_4912 - Methionine ABC transporter ATP-binding protein, at 5,668,572 to 5,669,282 _4912 Pf6N2E2_4913 - Predicted zinc-binding protein, at 5,669,419 to 5,669,997 _4913 Pf6N2E2_4914 - FIG00954755: hypothetical protein, at 5,670,118 to 5,670,510 _4914 Position (kb) 5668 5669 5670Strain fitness (log2 ratio) -2 -1 0 1at 5668.076 kb on + strand, within Pf6N2E2_4911at 5668.076 kb on + strand, within Pf6N2E2_4911at 5668.098 kb on + strand, within Pf6N2E2_4911at 5668.098 kb on + strand, within Pf6N2E2_4911at 5668.098 kb on + strand, within Pf6N2E2_4911at 5668.098 kb on + strand, within Pf6N2E2_4911at 5668.098 kb on + strand, within Pf6N2E2_4911at 5668.099 kb on - strand, within Pf6N2E2_4911at 5668.099 kb on - strand, within Pf6N2E2_4911at 5668.099 kb on - strand, within Pf6N2E2_4911at 5668.198 kb on - strand, within Pf6N2E2_4911at 5668.203 kb on + strand, within Pf6N2E2_4911at 5668.203 kb on + strand, within Pf6N2E2_4911at 5668.215 kb on + strand, within Pf6N2E2_4911at 5668.215 kb on + strand, within Pf6N2E2_4911at 5668.215 kb on + strand, within Pf6N2E2_4911at 5668.216 kb on - strand, within Pf6N2E2_4911at 5668.216 kb on - strand, within Pf6N2E2_4911at 5668.216 kb on - strand, within Pf6N2E2_4911at 5668.298 kb on - strand, within Pf6N2E2_4911at 5668.365 kb on + strand, within Pf6N2E2_4911at 5668.365 kb on + strand, within Pf6N2E2_4911at 5668.365 kb on + strand, within Pf6N2E2_4911at 5668.365 kb on + strand, within Pf6N2E2_4911at 5668.366 kb on - strand, within Pf6N2E2_4911at 5668.453 kb on + strandat 5668.454 kb on - strandat 5668.457 kb on + strandat 5668.458 kb on - strandat 5668.553 kb on + strandat 5668.554 kb on - strandat 5668.566 kb on + strandat 5668.566 kb on + strandat 5668.566 kb on + strandat 5668.566 kb on + strandat 5668.566 kb on + strandat 5668.566 kb on + strandat 5668.566 kb on + strandat 5668.566 kb on + strandat 5668.566 kb on + strandat 5668.566 kb on + strandat 5668.566 kb on + strandat 5668.566 kb on + strandat 5668.566 kb on + strandat 5668.567 kb on - strandat 5668.567 kb on - strandat 5668.567 kb on - strandat 5668.567 kb on - strandat 5668.567 kb on - strandat 5669.018 kb on + strand, within Pf6N2E2_4912at 5669.018 kb on + strand, within Pf6N2E2_4912at 5669.018 kb on + strand, within Pf6N2E2_4912at 5669.018 kb on + strand, within Pf6N2E2_4912at 5669.019 kb on - strand, within Pf6N2E2_4912at 5669.019 kb on - strand, within Pf6N2E2_4912at 5669.019 kb on - strand, within Pf6N2E2_4912at 5669.019 kb on - strand, within Pf6N2E2_4912at 5669.019 kb on - strand, within Pf6N2E2_4912at 5669.020 kb on + strand, within Pf6N2E2_4912at 5669.020 kb on + strand, within Pf6N2E2_4912at 5669.020 kb on + strand, within Pf6N2E2_4912at 5669.020 kb on + strand, within Pf6N2E2_4912at 5669.020 kb on + strand, within Pf6N2E2_4912at 5669.021 kb on - strand, within Pf6N2E2_4912at 5669.021 kb on - strand, within Pf6N2E2_4912at 5669.250 kb on + strandat 5669.250 kb on + strandat 5669.250 kb on + strandat 5669.250 kb on + strandat 5669.250 kb on + strandat 5669.251 kb on - strandat 5669.282 kb on + strandat 5669.283 kb on - strandat 5669.283 kb on - strandat 5669.299 kb on + strandat 5669.416 kb on + strandat 5669.416 kb on + strandat 5669.417 kb on - strandat 5669.417 kb on - strandat 5669.420 kb on + strandat 5669.420 kb on + strandat 5669.420 kb on + strandat 5669.420 kb on + strandat 5669.420 kb on + strandat 5669.421 kb on - strandat 5669.421 kb on - strandat 5669.421 kb on - strandat 5669.488 kb on + strand, within Pf6N2E2_4913at 5669.488 kb on + strand, within Pf6N2E2_4913at 5669.488 kb on + strand, within Pf6N2E2_4913at 5669.489 kb on - strand, within Pf6N2E2_4913at 5669.489 kb on - strand, within Pf6N2E2_4913at 5669.579 kb on + strand, within Pf6N2E2_4913at 5669.728 kb on + strand, within Pf6N2E2_4913at 5669.729 kb on - strand, within Pf6N2E2_4913at 5669.729 kb on - strand, within Pf6N2E2_4913at 5670.022 kb on - strandat 5670.101 kb on + strandat 5670.102 kb on - strandat 5670.102 kb on - strandat 5670.102 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3
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5,668,076 + Pf6N2E2_4911 0.62 +0.4
5,668,076 + Pf6N2E2_4911 0.62 +0.4
5,668,098 + Pf6N2E2_4911 0.64 -1.1
5,668,098 + Pf6N2E2_4911 0.64 +0.4
5,668,098 + Pf6N2E2_4911 0.64 +0.4
5,668,098 + Pf6N2E2_4911 0.64 +0.7
5,668,098 + Pf6N2E2_4911 0.64 -1.1
5,668,099 - Pf6N2E2_4911 0.64 -0.8
5,668,099 - Pf6N2E2_4911 0.64 -0.7
5,668,099 - Pf6N2E2_4911 0.64 -0.3
5,668,198 - Pf6N2E2_4911 0.72 +0.4
5,668,203 + Pf6N2E2_4911 0.72 -1.1
5,668,203 + Pf6N2E2_4911 0.72 -0.9
5,668,215 + Pf6N2E2_4911 0.73 -0.6
5,668,215 + Pf6N2E2_4911 0.73 -1.1
5,668,215 + Pf6N2E2_4911 0.73 -1.9
5,668,216 - Pf6N2E2_4911 0.73 +0.0
5,668,216 - Pf6N2E2_4911 0.73 +0.4
5,668,216 - Pf6N2E2_4911 0.73 +0.4
5,668,298 - Pf6N2E2_4911 0.80 -2.1
5,668,365 + Pf6N2E2_4911 0.85 -0.1
5,668,365 + Pf6N2E2_4911 0.85 -1.6
5,668,365 + Pf6N2E2_4911 0.85 +0.9
5,668,365 + Pf6N2E2_4911 0.85 +0.4
5,668,366 - Pf6N2E2_4911 0.85 +0.4
5,668,453 + -0.6
5,668,454 - -1.1
5,668,457 + +0.4
5,668,458 - +0.4
5,668,553 + -0.5
5,668,554 - +1.0
5,668,566 + +0.0
5,668,566 + -0.6
5,668,566 + +0.4
5,668,566 + +0.4
5,668,566 + -0.6
5,668,566 + -0.2
5,668,566 + +0.4
5,668,566 + +0.4
5,668,566 + -1.9
5,668,566 + +0.4
5,668,566 + -0.9
5,668,566 + -0.6
5,668,566 + -0.6
5,668,567 - +0.4
5,668,567 - +0.4
5,668,567 - +0.4
5,668,567 - -1.2
5,668,567 - +0.4
5,669,018 + Pf6N2E2_4912 0.63 -0.6
5,669,018 + Pf6N2E2_4912 0.63 -0.6
5,669,018 + Pf6N2E2_4912 0.63 -0.9
5,669,018 + Pf6N2E2_4912 0.63 +0.4
5,669,019 - Pf6N2E2_4912 0.63 -0.6
5,669,019 - Pf6N2E2_4912 0.63 +0.4
5,669,019 - Pf6N2E2_4912 0.63 +0.4
5,669,019 - Pf6N2E2_4912 0.63 -0.6
5,669,019 - Pf6N2E2_4912 0.63 +0.4
5,669,020 + Pf6N2E2_4912 0.63 -0.6
5,669,020 + Pf6N2E2_4912 0.63 +0.4
5,669,020 + Pf6N2E2_4912 0.63 -1.1
5,669,020 + Pf6N2E2_4912 0.63 -0.6
5,669,020 + Pf6N2E2_4912 0.63 +0.4
5,669,021 - Pf6N2E2_4912 0.63 -0.6
5,669,021 - Pf6N2E2_4912 0.63 -0.6
5,669,250 + -1.1
5,669,250 + +0.4
5,669,250 + +0.4
5,669,250 + +1.4
5,669,250 + -1.1
5,669,251 - -0.6
5,669,282 + -1.9
5,669,283 - +0.4
5,669,283 - +0.4
5,669,299 + -1.1
5,669,416 + -0.6
5,669,416 + -1.1
5,669,417 - -1.9
5,669,417 - -1.6
5,669,420 + -0.3
5,669,420 + -1.1
5,669,420 + +0.4
5,669,420 + -1.1
5,669,420 + -0.7
5,669,421 - -0.8
5,669,421 - +0.4
5,669,421 - -1.1
5,669,488 + Pf6N2E2_4913 0.12 -1.4
5,669,488 + Pf6N2E2_4913 0.12 -0.9
5,669,488 + Pf6N2E2_4913 0.12 -0.6
5,669,489 - Pf6N2E2_4913 0.12 -0.7
5,669,489 - Pf6N2E2_4913 0.12 +0.4
5,669,579 + Pf6N2E2_4913 0.28 -1.6
5,669,728 + Pf6N2E2_4913 0.53 -0.4
5,669,729 - Pf6N2E2_4913 0.54 -2.1
5,669,729 - Pf6N2E2_4913 0.54 +0.4
5,670,022 - -1.9
5,670,101 + +0.4
5,670,102 - -0.1
5,670,102 - +0.4
5,670,102 - +0.4

Or see this region's nucleotide sequence