Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4688

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
5,421,127	+		Pf6N2E2_4686	0.74	+0.5
5,421,127	+		Pf6N2E2_4686	0.74	-0.5
5,421,128	-		Pf6N2E2_4686	0.74	-1.1
5,421,130	+		Pf6N2E2_4686	0.74	+0.5
5,421,130	+		Pf6N2E2_4686	0.74	+0.5
5,421,130	+		Pf6N2E2_4686	0.74	+0.5
5,421,130	+		Pf6N2E2_4686	0.74	-0.5
5,421,130	+		Pf6N2E2_4686	0.74	-1.1
5,421,130	+		Pf6N2E2_4686	0.74	-0.5
5,421,131	-		Pf6N2E2_4686	0.74	-0.5
5,421,131	-		Pf6N2E2_4686	0.74	-1.2
5,421,207	-		Pf6N2E2_4686	0.81	-0.1
5,421,254	-		Pf6N2E2_4686	0.85	-1.5
5,421,385	-				-2.3
5,421,415	+				+1.5
5,421,416	-				-1.1
5,421,479	+				+0.5
5,421,480	-				-0.5
5,421,488	+				-0.8
5,421,489	-				+0.5
5,421,489	-				-1.1
5,421,489	-				-0.5
5,421,489	-				+0.5
5,421,613	-		Pf6N2E2_4687	0.19	+0.5
5,421,613	-		Pf6N2E2_4687	0.19	+0.5
5,421,613	-		Pf6N2E2_4687	0.19	-1.1
5,421,613	-		Pf6N2E2_4687	0.19	+0.5
5,421,613	-		Pf6N2E2_4687	0.19	-0.5
5,421,642	+		Pf6N2E2_4687	0.30	+0.5
5,421,643	-		Pf6N2E2_4687	0.31	-0.5
5,421,659	+		Pf6N2E2_4687	0.37	+0.5
5,421,659	+		Pf6N2E2_4687	0.37	-1.5
5,421,659	+		Pf6N2E2_4687	0.37	-0.5
5,421,659	+		Pf6N2E2_4687	0.37	-1.1
5,421,659	+		Pf6N2E2_4687	0.37	+0.5
5,421,660	-		Pf6N2E2_4687	0.37	+0.5
5,421,660	-		Pf6N2E2_4687	0.37	-0.4
5,421,660	-		Pf6N2E2_4687	0.37	-0.5
5,421,660	-		Pf6N2E2_4687	0.37	-1.0
5,421,660	-		Pf6N2E2_4687	0.37	-0.8
5,421,660	-		Pf6N2E2_4687	0.37	-1.1
5,421,660	-		Pf6N2E2_4687	0.37	-1.1
5,421,757	+		Pf6N2E2_4687	0.74	+0.5
5,421,818	+				-0.5
5,421,818	+				+0.5
5,421,819	-				-0.5
5,421,922	+				+0.5
5,421,922	+				+0.5
5,421,922	+				-0.8
5,421,923	-				-1.7
5,421,923	-				-0.3
5,422,175	+				+0.5
5,422,175	+				-1.8
5,422,175	+				-0.6
5,422,175	+				+0.5
5,422,175	+				-0.5
5,422,175	+				-0.5
5,422,175	+				-0.5
5,422,175	+				+2.8
5,422,175	+				-0.5
5,422,175	+				-0.5
5,422,175	+				-0.5
5,422,176	-				-1.5
5,422,176	-				-0.5
5,422,176	-				-1.3
5,422,176	-				-0.5
5,422,176	-				-0.5
5,422,176	-				+0.5
5,422,176	-				+0.5
5,422,176	-				-0.5
5,422,176	-				-0.5
5,422,176	-				-0.3
5,422,176	-				+0.5
5,422,176	-				+0.3
5,422,176	-				-1.7
5,422,283	-		Pf6N2E2_4688	0.13	-0.5
5,422,627	+		Pf6N2E2_4688	0.43	-0.5
5,422,627	+		Pf6N2E2_4688	0.43	+0.5
5,422,677	-		Pf6N2E2_4688	0.47	+0.5
5,422,964	+		Pf6N2E2_4688	0.72	-0.2
5,423,051	+		Pf6N2E2_4688	0.79	-0.2
5,423,051	+		Pf6N2E2_4688	0.79	-1.8
5,423,052	-		Pf6N2E2_4688	0.80	-0.5
5,423,052	-		Pf6N2E2_4688	0.80	-1.5
5,423,052	-		Pf6N2E2_4688	0.80	+0.1
5,423,347	+				+1.5
5,423,348	-				-1.5
5,423,454	+		Pf6N2E2_4689	0.30	+0.5
5,423,454	+		Pf6N2E2_4689	0.30	+0.5
5,423,455	-		Pf6N2E2_4689	0.30	-0.5
5,423,483	+		Pf6N2E2_4689	0.36	+0.5
5,423,513	-		Pf6N2E2_4689	0.43	-0.6
5,423,513	-		Pf6N2E2_4689	0.43	-1.0
5,423,513	-		Pf6N2E2_4689	0.43	+0.5
5,423,593	+		Pf6N2E2_4689	0.59	+0.5
5,423,593	+		Pf6N2E2_4689	0.59	-0.4
5,423,593	+		Pf6N2E2_4689	0.59	-1.2
5,423,689	+		Pf6N2E2_4689	0.79	-0.5
5,423,689	+		Pf6N2E2_4689	0.79	-1.3
5,423,707	+		Pf6N2E2_4689	0.83	+0.5
5,423,707	+		Pf6N2E2_4689	0.83	+0.5
5,423,707	+		Pf6N2E2_4689	0.83	-0.5
5,423,707	+		Pf6N2E2_4689	0.83	-1.3
5,423,734	+		Pf6N2E2_4689	0.89	-0.6
5,423,735	-		Pf6N2E2_4689	0.89	-2.3
5,423,735	-		Pf6N2E2_4689	0.89	+0.5
5,423,735	-		Pf6N2E2_4689	0.89	-0.5
5,423,767	+				+0.5
5,423,767	+				+0.5
5,423,767	+				-0.5
5,423,768	-				+0.5
5,423,768	-				+0.5
5,423,768	-				-0.1
5,423,804	-				+0.5
5,423,804	-				-1.1
5,423,804	-				-0.8
5,423,815	+				+0.3
5,423,816	-				-0.8
5,423,866	-				-0.5
5,423,878	+				-1.7
5,423,878	+				-0.3
5,423,878	+				-1.7
5,423,892	+				-2.6
5,423,893	-				+0.5
5,423,893	-				+0.5
5,423,893	-				-1.5
5,423,893	-				+0.5
5,424,066	-		Pf6N2E2_4690	0.11	-0.5
5,424,066	-		Pf6N2E2_4690	0.11	-1.3
5,424,066	-		Pf6N2E2_4690	0.11	-1.5
5,424,142	+		Pf6N2E2_4690	0.18	-0.8
5,424,142	+		Pf6N2E2_4690	0.18	-0.5
5,424,142	+		Pf6N2E2_4690	0.18	+0.5
5,424,143	-		Pf6N2E2_4690	0.19	-0.5
5,424,143	-		Pf6N2E2_4690	0.19	-0.2
5,424,220	+		Pf6N2E2_4690	0.27	-1.1
5,424,220	+		Pf6N2E2_4690	0.27	+0.1
5,424,220	+		Pf6N2E2_4690	0.27	-1.1
5,424,221	-		Pf6N2E2_4690	0.27	+0.5
5,424,221	-		Pf6N2E2_4690	0.27	-0.5
5,424,221	-		Pf6N2E2_4690	0.27	+0.5