Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4415

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
5,147,971	+		Pf6N2E2_4413	0.31	-0.1
5,147,971	+		Pf6N2E2_4413	0.31	+0.1
5,147,971	+		Pf6N2E2_4413	0.31	+0.5
5,147,971	+		Pf6N2E2_4413	0.31	-0.1
5,147,971	+		Pf6N2E2_4413	0.31	+0.1
5,147,971	+		Pf6N2E2_4413	0.31	+0.5
5,147,972	-		Pf6N2E2_4413	0.31	-0.5
5,147,972	-		Pf6N2E2_4413	0.31	+0.5
5,147,972	-		Pf6N2E2_4413	0.31	-2.4
5,148,015	+		Pf6N2E2_4413	0.41	-1.1
5,148,015	+		Pf6N2E2_4413	0.41	-0.5
5,148,015	+		Pf6N2E2_4413	0.41	-0.8
5,148,015	+		Pf6N2E2_4413	0.41	+0.5
5,148,015	+		Pf6N2E2_4413	0.41	-0.6
5,148,015	+		Pf6N2E2_4413	0.41	-0.5
5,148,071	+		Pf6N2E2_4413	0.54	-1.1
5,148,071	+		Pf6N2E2_4413	0.54	+0.1
5,148,072	-		Pf6N2E2_4413	0.54	-1.1
5,148,194	+		Pf6N2E2_4413	0.83	-0.5
5,148,195	-		Pf6N2E2_4413	0.83	-1.1
5,148,248	+				-0.1
5,148,249	-				+0.5
5,148,249	-				+0.5
5,148,249	-				+0.5
5,148,263	+				+1.1
5,148,330	+				-0.3
5,148,332	+				+0.5
5,148,332	+				-1.5
5,148,332	+				+0.5
5,148,332	+				+1.5
5,148,332	+				-1.5
5,148,333	-				+0.5
5,148,333	-				+0.5
5,148,336	+				+0.2
5,148,336	+				+0.0
5,148,336	+				-0.7
5,148,336	+				-1.1
5,148,336	+				+0.0
5,148,336	+				+0.1
5,148,336	+				+0.5
5,148,336	+				-0.2
5,148,337	-				+0.5
5,148,337	-				+0.5
5,148,362	+				+0.5
5,148,363	-				+0.5
5,148,363	-				+0.5
5,148,405	+		Pf6N2E2_4414	0.11	-0.5
5,148,405	+		Pf6N2E2_4414	0.11	+0.5
5,148,406	-		Pf6N2E2_4414	0.12	+0.5
5,148,406	-		Pf6N2E2_4414	0.12	-0.5
5,148,543	+		Pf6N2E2_4414	0.54	-0.5
5,148,671	+				+0.5
5,148,671	+				+0.5
5,148,671	+				+0.5
5,148,671	+				-1.5
5,148,671	+				+0.5
5,148,685	+				-1.1
5,148,685	+				+0.5
5,148,686	-				+0.5
5,148,693	+				+0.5
5,148,837	+				-0.5
5,148,837	+				-0.6
5,148,837	+				-1.5
5,148,837	+				+0.5
5,148,838	-				-1.8
5,148,927	-				+0.5
5,149,180	-		Pf6N2E2_4415	0.40	-0.5
5,149,180	-		Pf6N2E2_4415	0.40	-0.5
5,149,523	+		Pf6N2E2_4415	0.89	-2.1
5,149,523	+		Pf6N2E2_4415	0.89	+0.5
5,149,523	+		Pf6N2E2_4415	0.89	+0.5
5,149,685	+				+0.5
5,149,720	+		Pf6N2E2_4416	0.13	+0.5
5,149,721	-		Pf6N2E2_4416	0.13	+0.5
5,150,040	+		Pf6N2E2_4416	0.49	+0.5
5,150,078	+		Pf6N2E2_4416	0.53	+0.5
5,150,079	-		Pf6N2E2_4416	0.53	+0.5
5,150,079	-		Pf6N2E2_4416	0.53	+0.5
5,150,253	-		Pf6N2E2_4416	0.73	+0.5
5,150,259	-		Pf6N2E2_4416	0.73	+0.5
5,150,509	-				-0.5
5,150,566	+				-1.6
5,150,566	+				+0.5
5,150,567	-				-0.5
5,150,599	+		Pf6N2E2_4417	0.13	-0.5
5,150,599	+		Pf6N2E2_4417	0.13	-1.1
5,150,600	-		Pf6N2E2_4417	0.14	-0.8
5,150,600	-		Pf6N2E2_4417	0.14	-1.0
5,150,600	-		Pf6N2E2_4417	0.14	-0.4