Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4074

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
4,749,241	+		Pf6N2E2_4073	0.49	-1.8
4,749,242	-		Pf6N2E2_4073	0.49	-0.1
4,749,242	-		Pf6N2E2_4073	0.49	-1.1
4,749,283	+		Pf6N2E2_4073	0.52	-2.4
4,749,404	-		Pf6N2E2_4073	0.59	-1.1
4,749,582	+		Pf6N2E2_4073	0.70	+1.5
4,749,658	+		Pf6N2E2_4073	0.74	+0.5
4,749,665	-		Pf6N2E2_4073	0.75	-1.8
4,749,922	+				-3.0
4,749,923	-				-3.1
4,749,923	-				+1.5
4,749,923	-				-0.9
4,750,096	+				+0.5
4,750,096	+				-2.0
4,750,097	-				-0.7
4,750,097	-				-0.5
4,750,097	-				+0.5
4,750,097	-				-0.4
4,750,097	-				-0.7
4,750,097	-				-0.5
4,750,105	+				+0.5
4,750,106	-				+0.5
4,750,106	-				-1.8
4,750,118	-				-0.5
4,750,507	+		Pf6N2E2_4074	0.18	-1.8
4,750,507	+		Pf6N2E2_4074	0.18	-2.4
4,750,507	+		Pf6N2E2_4074	0.18	-2.1
4,750,508	-		Pf6N2E2_4074	0.18	-1.5
4,750,508	-				-0.3
4,750,508	-		Pf6N2E2_4074	0.18	-1.8
4,750,508	-		Pf6N2E2_4074	0.18	-2.3
4,750,508	-		Pf6N2E2_4074	0.18	-1.0
4,750,508	-		Pf6N2E2_4074	0.18	-2.2
4,750,508	-		Pf6N2E2_4074	0.18	-0.8
4,750,508	-		Pf6N2E2_4074	0.18	-1.4
4,750,636	+		Pf6N2E2_4074	0.23	-1.9
4,750,636	+		Pf6N2E2_4074	0.23	-5.4
4,750,648	+		Pf6N2E2_4074	0.24	-2.5
4,750,648	+		Pf6N2E2_4074	0.24	-2.3
4,750,649	-		Pf6N2E2_4074	0.24	-0.6
4,750,649	-		Pf6N2E2_4074	0.24	-1.2
4,750,649	-		Pf6N2E2_4074	0.24	-1.6
4,750,649	-				-2.3
4,750,649	-		Pf6N2E2_4074	0.24	-1.7
4,750,649	-		Pf6N2E2_4074	0.24	-1.0
4,750,649	-		Pf6N2E2_4074	0.24	-1.5
4,750,933	+		Pf6N2E2_4074	0.36	+0.5
4,750,934	-		Pf6N2E2_4074	0.36	-1.8
4,750,942	+		Pf6N2E2_4074	0.37	-1.5
4,750,942	+		Pf6N2E2_4074	0.37	-2.0
4,750,943	-		Pf6N2E2_4074	0.37	-1.2
4,750,943	-		Pf6N2E2_4074	0.37	-1.1
4,750,987	+		Pf6N2E2_4074	0.39	-1.8
4,750,988	-		Pf6N2E2_4074	0.39	+0.5
4,750,988	-		Pf6N2E2_4074	0.39	-2.2
4,751,077	+		Pf6N2E2_4074	0.42	-1.5
4,751,077	+		Pf6N2E2_4074	0.42	-2.0
4,751,077	+		Pf6N2E2_4074	0.42	-2.1
4,751,077	+		Pf6N2E2_4074	0.42	-2.5
4,751,077	+		Pf6N2E2_4074	0.42	-1.8
4,751,078	-		Pf6N2E2_4074	0.42	-1.5
4,751,078	-		Pf6N2E2_4074	0.42	-0.7
4,751,078	-		Pf6N2E2_4074	0.42	-0.4
4,751,078	-		Pf6N2E2_4074	0.42	-1.1
4,751,078	-		Pf6N2E2_4074	0.42	-1.2
4,751,078	-		Pf6N2E2_4074	0.42	-1.1
4,751,093	-		Pf6N2E2_4074	0.43	-1.6
4,751,261	+		Pf6N2E2_4074	0.50	-1.7
4,751,262	-		Pf6N2E2_4074	0.51	-1.7
4,751,262	-		Pf6N2E2_4074	0.51	-1.7
4,751,262	-		Pf6N2E2_4074	0.51	-1.8
4,751,378	+		Pf6N2E2_4074	0.56	-1.9
4,751,378	+		Pf6N2E2_4074	0.56	-1.3
4,751,378	+		Pf6N2E2_4074	0.56	-1.6
4,751,378	+		Pf6N2E2_4074	0.56	-2.6
4,751,379	-		Pf6N2E2_4074	0.56	-1.8
4,751,379	-		Pf6N2E2_4074	0.56	-2.4
4,751,530	+		Pf6N2E2_4074	0.62	-2.0
4,751,531	-		Pf6N2E2_4074	0.62	-2.6
4,751,596	+		Pf6N2E2_4074	0.65	-1.4
4,751,596	+		Pf6N2E2_4074	0.65	-2.0
4,751,596	+		Pf6N2E2_4074	0.65	-1.5
4,751,596	+		Pf6N2E2_4074	0.65	+0.5
4,751,596	+		Pf6N2E2_4074	0.65	-2.2
4,751,596	+		Pf6N2E2_4074	0.65	-2.1
4,751,596	+		Pf6N2E2_4074	0.65	-2.4
4,751,596	+		Pf6N2E2_4074	0.65	-1.7
4,751,596	+		Pf6N2E2_4074	0.65	-2.9
4,751,597	-		Pf6N2E2_4074	0.65	-2.3
4,751,597	-		Pf6N2E2_4074	0.65	-0.5
4,751,597	-		Pf6N2E2_4074	0.65	-1.3
4,751,597	-		Pf6N2E2_4074	0.65	-2.1
4,751,840	-		Pf6N2E2_4074	0.76	-1.8
4,751,845	+		Pf6N2E2_4074	0.76	-2.5
4,751,845	+		Pf6N2E2_4074	0.76	-1.8
4,751,895	-		Pf6N2E2_4074	0.78	-2.2
4,751,896	+		Pf6N2E2_4074	0.78	-2.3
4,751,896	+		Pf6N2E2_4074	0.78	-1.6
4,751,896	+		Pf6N2E2_4074	0.78	-2.9
4,751,896	+		Pf6N2E2_4074	0.78	-2.4
4,751,896	+		Pf6N2E2_4074	0.78	-1.1
4,751,896	+		Pf6N2E2_4074	0.78	-1.9
4,751,897	-		Pf6N2E2_4074	0.78	-0.7
4,751,897	-		Pf6N2E2_4074	0.78	-3.4
4,751,897	-		Pf6N2E2_4074	0.78	-2.1
4,751,897	-		Pf6N2E2_4074	0.78	-1.9
4,751,897	-		Pf6N2E2_4074	0.78	-1.1
4,751,910	+		Pf6N2E2_4074	0.79	-1.0
4,751,910	+		Pf6N2E2_4074	0.79	-1.9
4,752,202	+				-2.2
4,752,202	+				-1.6
4,752,202	+				-2.1
4,752,227	+				-1.5
4,752,228	-				-2.5
4,752,228	-				-2.2
4,752,265	+				-2.3
4,752,266	-				-1.9
4,752,300	-				-1.5
4,752,327	-				-0.5
4,752,359	+				-1.7
4,752,360	-				-1.5
4,752,411	+				-0.5
4,752,541	+				-0.5
4,752,541	+				-0.4
4,752,542	-				-0.6
4,752,542	-				-1.1
4,752,544	+				-1.2
4,752,544	+				-0.5
4,752,544	+				-0.9
4,752,545	-				-0.7
4,752,545	-				+0.5
4,752,545	-				-0.5
4,752,626	-				-1.6
4,752,626	-				+0.5
4,752,733	+		Pf6N2E2_4075	0.19	-1.1
4,752,734	-		Pf6N2E2_4075	0.19	-2.9
4,752,754	+		Pf6N2E2_4075	0.21	-2.4
4,752,754	+		Pf6N2E2_4075	0.21	-0.7
4,752,898	-		Pf6N2E2_4075	0.36	-2.0
4,752,940	+		Pf6N2E2_4075	0.40	-2.7
4,752,941	-		Pf6N2E2_4075	0.40	-2.1
4,752,941	-		Pf6N2E2_4075	0.40	-2.1
4,752,979	+		Pf6N2E2_4075	0.44	-2.5
4,753,094	+		Pf6N2E2_4075	0.55	-1.5
4,753,156	-		Pf6N2E2_4075	0.61	-1.5
4,753,156	-		Pf6N2E2_4075	0.61	-3.2
4,753,205	-		Pf6N2E2_4075	0.66	-2.7
4,753,335	+		Pf6N2E2_4075	0.79	-3.0
4,753,335	+		Pf6N2E2_4075	0.79	-3.0
4,753,335	+		Pf6N2E2_4075	0.79	-0.5
4,753,336	-		Pf6N2E2_4075	0.79	-2.8
4,753,357	+		Pf6N2E2_4075	0.81	-2.9
4,753,358	-		Pf6N2E2_4075	0.82	-2.1