Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_395

Experiment: Ying_AminoAcid20 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_394 and Pf6N2E2_395 are separated by 337 nucleotidesPf6N2E2_395 and Pf6N2E2_396 are separated by 684 nucleotides Pf6N2E2_394 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 462,283 to 463,059 _394 Pf6N2E2_395 - Glutathione S-transferase (EC 2.5.1.18), at 463,397 to 463,828 _395 Pf6N2E2_396 - hypothetical protein, at 464,513 to 464,920 _396 Position (kb) 463 464Strain fitness (log2 ratio) -3 -2 -1 0 1at 462.648 kb on + strand, within Pf6N2E2_394at 462.720 kb on + strand, within Pf6N2E2_394at 462.721 kb on - strand, within Pf6N2E2_394at 462.721 kb on - strand, within Pf6N2E2_394at 462.721 kb on - strand, within Pf6N2E2_394at 462.731 kb on - strand, within Pf6N2E2_394at 462.760 kb on + strand, within Pf6N2E2_394at 462.761 kb on - strand, within Pf6N2E2_394at 462.882 kb on + strand, within Pf6N2E2_394at 462.890 kb on - strand, within Pf6N2E2_394at 463.008 kb on + strandat 463.009 kb on - strandat 463.009 kb on - strandat 463.082 kb on + strandat 463.082 kb on + strandat 463.082 kb on + strandat 463.083 kb on - strandat 463.083 kb on - strandat 463.083 kb on - strandat 463.083 kb on - strandat 463.170 kb on - strandat 463.184 kb on + strandat 463.271 kb on + strandat 463.271 kb on + strandat 463.272 kb on - strandat 463.272 kb on - strandat 463.435 kb on - strandat 463.558 kb on + strand, within Pf6N2E2_395at 463.602 kb on + strand, within Pf6N2E2_395at 463.603 kb on - strand, within Pf6N2E2_395at 463.697 kb on + strand, within Pf6N2E2_395at 463.698 kb on - strand, within Pf6N2E2_395at 463.731 kb on - strand, within Pf6N2E2_395at 463.795 kb on - strandat 463.795 kb on - strandat 463.882 kb on - strandat 463.924 kb on - strandat 463.957 kb on - strandat 464.009 kb on - strandat 464.009 kb on - strandat 464.475 kb on + strandat 464.476 kb on - strandat 464.508 kb on - strandat 464.508 kb on - strandat 464.508 kb on - strandat 464.508 kb on - strandat 464.511 kb on + strandat 464.511 kb on + strandat 464.511 kb on + strandat 464.511 kb on + strandat 464.512 kb on - strandat 464.512 kb on - strandat 464.532 kb on + strandat 464.532 kb on + strandat 464.533 kb on - strandat 464.533 kb on - strandat 464.594 kb on - strand, within Pf6N2E2_396at 464.594 kb on - strand, within Pf6N2E2_396at 464.594 kb on - strand, within Pf6N2E2_396at 464.690 kb on + strand, within Pf6N2E2_396at 464.719 kb on - strand, within Pf6N2E2_396at 464.719 kb on - strand, within Pf6N2E2_396at 464.812 kb on + strand, within Pf6N2E2_396at 464.812 kb on + strand, within Pf6N2E2_396at 464.812 kb on + strand, within Pf6N2E2_396

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3
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462,648 + Pf6N2E2_394 0.47 -0.7
462,720 + Pf6N2E2_394 0.56 +0.9
462,721 - Pf6N2E2_394 0.56 +0.3
462,721 - Pf6N2E2_394 0.56 -0.9
462,721 - Pf6N2E2_394 0.56 +0.3
462,731 - Pf6N2E2_394 0.58 +0.3
462,760 + Pf6N2E2_394 0.61 +0.3
462,761 - Pf6N2E2_394 0.62 +0.1
462,882 + Pf6N2E2_394 0.77 +0.3
462,890 - Pf6N2E2_394 0.78 +0.3
463,008 + +0.3
463,009 - -0.7
463,009 - +0.3
463,082 + +0.3
463,082 + +0.3
463,082 + -0.7
463,083 - -3.0
463,083 - -0.7
463,083 - -0.8
463,083 - -1.1
463,170 - +0.3
463,184 + +0.3
463,271 + +0.3
463,271 + -0.1
463,272 - -0.5
463,272 - -0.3
463,435 - -0.9
463,558 + Pf6N2E2_395 0.37 -0.6
463,602 + Pf6N2E2_395 0.47 -0.7
463,603 - Pf6N2E2_395 0.48 +0.3
463,697 + Pf6N2E2_395 0.69 -0.7
463,698 - Pf6N2E2_395 0.70 +1.3
463,731 - Pf6N2E2_395 0.77 +0.3
463,795 - +0.3
463,795 - +0.3
463,882 - +0.3
463,924 - +0.3
463,957 - +0.3
464,009 - +0.3
464,009 - +0.3
464,475 + -0.7
464,476 - -1.1
464,508 - -1.1
464,508 - +0.3
464,508 - -0.7
464,508 - +0.3
464,511 + -0.7
464,511 + -0.9
464,511 + +0.3
464,511 + +0.3
464,512 - -2.0
464,512 - +0.3
464,532 + +0.3
464,532 + +0.3
464,533 - -0.7
464,533 - +0.3
464,594 - Pf6N2E2_396 0.20 -0.7
464,594 - Pf6N2E2_396 0.20 +0.3
464,594 - Pf6N2E2_396 0.20 -0.9
464,690 + Pf6N2E2_396 0.43 +0.3
464,719 - Pf6N2E2_396 0.50 -0.7
464,719 - Pf6N2E2_396 0.50 -0.7
464,812 + Pf6N2E2_396 0.73 -0.7
464,812 + Pf6N2E2_396 0.73 +0.3
464,812 + Pf6N2E2_396 0.73 +0.3

Or see this region's nucleotide sequence