Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3785

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
4,405,665	+		Pf6N2E2_3782	0.37	-0.5
4,405,665	+		Pf6N2E2_3782	0.37	+0.5
4,405,665	+		Pf6N2E2_3782	0.37	+0.5
4,405,666	-		Pf6N2E2_3782	0.37	-5.0
4,405,666	-		Pf6N2E2_3782	0.37	-4.4
4,405,666	-		Pf6N2E2_3782	0.37	-3.7
4,405,666	-		Pf6N2E2_3782	0.37	-4.0
4,405,666	-		Pf6N2E2_3782	0.37	-4.2
4,405,828	-		Pf6N2E2_3782	0.78	-4.0
4,405,893	+				-0.5
4,405,893	+				-1.0
4,405,894	-				-3.5
4,405,894	-				-5.0
4,405,904	+				-1.1
4,405,904	+				-0.5
4,405,904	+				-0.4
4,405,905	-				-4.6
4,405,905	-				-3.5
4,405,905	-				-4.8
4,405,905	-				-2.7
4,405,905	-				-0.5
4,405,905	-				-3.4
4,405,905	-				-3.7
4,405,978	+		Pf6N2E2_3783	0.21	-0.3
4,405,979	-		Pf6N2E2_3783	0.21	-2.1
4,405,979	-		Pf6N2E2_3783	0.21	-4.1
4,406,101	+		Pf6N2E2_3783	0.58	-0.5
4,406,101	+		Pf6N2E2_3783	0.58	+0.5
4,406,101	+		Pf6N2E2_3783	0.58	-0.4
4,406,101	+		Pf6N2E2_3783	0.58	+0.3
4,406,101	+		Pf6N2E2_3783	0.58	+0.5
4,406,102	-		Pf6N2E2_3783	0.58	+0.5
4,406,271	+				-3.4
4,406,562	+				-1.8
4,406,562	+				-2.7
4,406,562	+				-2.2
4,406,764	+		Pf6N2E2_3785	0.47	-3.3
4,406,764	+		Pf6N2E2_3785	0.47	-2.9
4,406,764	+		Pf6N2E2_3785	0.47	-5.1
4,406,764	+		Pf6N2E2_3785	0.47	-4.5
4,406,764	+		Pf6N2E2_3785	0.47	-4.7
4,406,764	+		Pf6N2E2_3785	0.47	-5.6
4,406,765	-		Pf6N2E2_3785	0.48	-2.5
4,406,928	+		Pf6N2E2_3785	0.86	-2.5
4,406,928	+		Pf6N2E2_3785	0.86	+0.5
4,406,928	+		Pf6N2E2_3785	0.86	+0.5
4,406,928	+		Pf6N2E2_3785	0.86	-2.3
4,406,928	+		Pf6N2E2_3785	0.86	+0.5
4,406,928	+		Pf6N2E2_3785	0.86	-1.5
4,406,928	+		Pf6N2E2_3785	0.86	-1.1
4,406,962	+				-1.1
4,406,962	+				-0.3
4,406,962	+				-0.5
4,407,292	+		Pf6N2E2_3786	0.39	-5.6
4,407,370	+		Pf6N2E2_3786	0.48	-4.8
4,407,370	+		Pf6N2E2_3786	0.48	+0.5
4,407,373	+		Pf6N2E2_3786	0.49	-4.3
4,407,454	+		Pf6N2E2_3786	0.59	-4.3
4,407,454	+		Pf6N2E2_3786	0.59	-3.2
4,407,556	+		Pf6N2E2_3786	0.72	-4.1
4,407,577	+		Pf6N2E2_3786	0.74	-2.5
4,407,577	+		Pf6N2E2_3786	0.74	-2.5
4,407,577	+		Pf6N2E2_3786	0.74	-3.9