Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3718 and Pf6N2E2_3719 overlap by 8 nucleotides Pf6N2E2_3719 and Pf6N2E2_3720 overlap by 4 nucleotides Pf6N2E2_3720 and Pf6N2E2_3721 are separated by 4 nucleotides
Pf6N2E2_3718 - Putative histidine ammonia-lyase protein, at 4,331,270 to 4,332,808
_3718
Pf6N2E2_3719 - FIG002571: 4-hydroxybenzoyl-CoA thioesterase domain protein, at 4,332,801 to 4,333,226
_3719
Pf6N2E2_3720 - FIG027190: Putative transmembrane protein, at 4,333,223 to 4,333,816
_3720
Pf6N2E2_3721 - FIG021862: membrane protein, exporter, at 4,333,821 to 4,336,139
_3721
Position (kb) 4333
4334 Strain fitness (log2 ratio) -1
0
1 at 4332.243 kb on + strand, within Pf6N2E2_3718 at 4332.244 kb on - strand, within Pf6N2E2_3718 at 4332.264 kb on - strand, within Pf6N2E2_3718 at 4332.274 kb on + strand, within Pf6N2E2_3718 at 4332.352 kb on - strand, within Pf6N2E2_3718 at 4332.365 kb on + strand, within Pf6N2E2_3718 at 4332.366 kb on - strand, within Pf6N2E2_3718 at 4332.366 kb on - strand, within Pf6N2E2_3718 at 4332.807 kb on - strand at 4332.891 kb on + strand, within Pf6N2E2_3719 at 4332.891 kb on + strand, within Pf6N2E2_3719 at 4332.892 kb on - strand, within Pf6N2E2_3719 at 4332.892 kb on - strand, within Pf6N2E2_3719 at 4332.892 kb on - strand, within Pf6N2E2_3719 at 4332.892 kb on - strand, within Pf6N2E2_3719 at 4332.901 kb on - strand, within Pf6N2E2_3719 at 4332.901 kb on - strand, within Pf6N2E2_3719 at 4332.948 kb on + strand, within Pf6N2E2_3719 at 4332.948 kb on + strand, within Pf6N2E2_3719 at 4332.949 kb on - strand, within Pf6N2E2_3719 at 4333.741 kb on + strand, within Pf6N2E2_3720 at 4333.742 kb on - strand, within Pf6N2E2_3720 at 4333.749 kb on + strand, within Pf6N2E2_3720 at 4334.376 kb on - strand, within Pf6N2E2_3721 at 4334.769 kb on + strand, within Pf6N2E2_3721 at 4334.769 kb on + strand, within Pf6N2E2_3721 at 4334.769 kb on + strand, within Pf6N2E2_3721 at 4334.769 kb on + strand, within Pf6N2E2_3721
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 4,332,243 + Pf6N2E2_3718 0.63 -0.3 4,332,244 - Pf6N2E2_3718 0.63 -0.5 4,332,264 - Pf6N2E2_3718 0.65 -0.5 4,332,274 + Pf6N2E2_3718 0.65 +0.5 4,332,352 - Pf6N2E2_3718 0.70 -1.6 4,332,365 + Pf6N2E2_3718 0.71 -0.5 4,332,366 - Pf6N2E2_3718 0.71 -0.1 4,332,366 - Pf6N2E2_3718 0.71 -0.1 4,332,807 - -0.5 4,332,891 + Pf6N2E2_3719 0.21 +0.5 4,332,891 + Pf6N2E2_3719 0.21 +0.5 4,332,892 - Pf6N2E2_3719 0.21 +0.5 4,332,892 - Pf6N2E2_3719 0.21 -1.7 4,332,892 - Pf6N2E2_3719 0.21 -0.5 4,332,892 - Pf6N2E2_3719 0.21 -0.4 4,332,901 - Pf6N2E2_3719 0.23 -0.5 4,332,901 - Pf6N2E2_3719 0.23 -1.6 4,332,948 + Pf6N2E2_3719 0.35 +0.5 4,332,948 + Pf6N2E2_3719 0.35 +0.5 4,332,949 - Pf6N2E2_3719 0.35 -0.5 4,333,741 + Pf6N2E2_3720 0.87 -1.1 4,333,742 - Pf6N2E2_3720 0.87 -0.5 4,333,749 + Pf6N2E2_3720 0.89 +0.5 4,334,376 - Pf6N2E2_3721 0.24 -0.5 4,334,769 + Pf6N2E2_3721 0.41 -0.5 4,334,769 + Pf6N2E2_3721 0.41 +0.9 4,334,769 + Pf6N2E2_3721 0.41 +0.5 4,334,769 + Pf6N2E2_3721 0.41 +0.5
Or see this region's nucleotide sequence