Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2871

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
3,358,142	+		Pf6N2E2_2870	0.23	-0.6
3,358,143	-		Pf6N2E2_2870	0.23	+0.4
3,358,274	+		Pf6N2E2_2870	0.37	+0.4
3,358,274	+		Pf6N2E2_2870	0.37	-0.6
3,358,277	+		Pf6N2E2_2870	0.37	+0.4
3,358,454	+		Pf6N2E2_2870	0.56	+0.4
3,358,509	-		Pf6N2E2_2870	0.62	+0.4
3,358,784	+				+0.4
3,358,784	+				-0.6
3,358,784	+				+0.4
3,358,940	+				-1.2
3,358,940	+				+0.4
3,358,940	+				-0.5
3,358,941	-				-0.6
3,358,941	-				-0.6
3,359,028	+				-0.8
3,359,042	+				+0.4
3,359,042	+				+1.4
3,359,042	+				+0.4
3,359,043	-				+0.4
3,359,043	-				+0.4
3,359,043	-				+0.6
3,359,043	-				+0.4
3,359,043	-				+0.4
3,359,077	+				-0.6
3,359,078	-				+0.4
3,359,078	-				-1.2
3,359,078	-				+0.4
3,359,078	-				+0.4
3,359,130	+				+0.4
3,359,272	+		Pf6N2E2_2871	0.40	-0.6
3,359,438	-		Pf6N2E2_2871	0.84	+0.4
3,359,438	-		Pf6N2E2_2871	0.84	-0.6
3,359,438	-		Pf6N2E2_2871	0.84	-1.2
3,359,463	+				-1.2
3,359,463	+				+0.2
3,359,464	-				+0.4
3,359,466	+				+0.4
3,359,466	+				-0.5
3,359,467	-				+0.4
3,359,467	-				+0.4
3,359,995	+		Pf6N2E2_2872	0.17	-0.6
3,360,044	+		Pf6N2E2_2872	0.20	-0.6
3,360,052	+		Pf6N2E2_2872	0.21	-1.2
3,360,052	+		Pf6N2E2_2872	0.21	+0.4
3,360,052	+		Pf6N2E2_2872	0.21	+0.4
3,360,470	+		Pf6N2E2_2872	0.45	-0.6
3,360,471	-		Pf6N2E2_2872	0.45	-1.4