Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2844

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
3,332,380	+				+0.4
3,332,386	+				-1.2
3,332,387	-				-2.1
3,332,501	+				+0.4
3,332,540	-		Pf6N2E2_2842	0.34	-0.6
3,332,560	+		Pf6N2E2_2842	0.51	-0.2
3,332,731	-				-0.3
3,332,907	+				-0.4
3,332,997	+				+0.4
3,332,998	-				-1.2
3,333,282	-		Pf6N2E2_2844	0.77	-1.6
3,333,282	-		Pf6N2E2_2844	0.77	-0.6
3,333,322	+		Pf6N2E2_2844	0.89	-1.2
3,333,322	+		Pf6N2E2_2844	0.89	-1.6
3,333,322	+		Pf6N2E2_2844	0.89	-0.6
3,333,322	+		Pf6N2E2_2844	0.89	-0.6
3,333,322	+		Pf6N2E2_2844	0.89	-0.6
3,333,322	+		Pf6N2E2_2844	0.89	+0.4
3,333,322	+		Pf6N2E2_2844	0.89	+0.4
3,333,322	+		Pf6N2E2_2844	0.89	-1.2
3,333,323	-		Pf6N2E2_2844	0.89	+0.4
3,333,326	+				+0.4
3,333,327	-				-1.2
3,333,358	+				+0.4
3,333,358	+				+0.4
3,333,359	-				+0.4
3,333,359	-				-0.8
3,333,359	-				+0.4
3,333,359	-				+0.4
3,333,359	-				-1.9
3,333,359	-				+0.4
3,333,359	-				+0.4
3,333,359	-				-0.6
3,333,359	-				+1.8
3,333,485	+				+1.0
3,333,485	+				+0.3
3,333,486	-				+0.4
3,333,486	-				+0.4
3,333,486	-				-0.0
3,333,506	+				+0.4
3,333,515	+				+0.4
3,333,515	+				-0.6
3,333,515	+				-1.9
3,333,515	+				-0.6
3,333,516	-				-0.3
3,333,516	-				+0.3
3,333,519	+				-1.2
3,333,519	+				+0.4
3,333,519	+				+0.4
3,333,519	+				-0.0
3,333,520	-				-0.6
3,333,599	+				+0.4
3,333,649	-				+0.4
3,333,719	+				-0.1
3,333,720	-				+0.4
3,333,750	+				+0.4
3,333,751	-				+0.4
3,334,080	+		Pf6N2E2_2845	0.17	-1.6
3,334,080	+		Pf6N2E2_2845	0.17	-0.6
3,334,081	-		Pf6N2E2_2845	0.17	-1.6