Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2623

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
3,082,669	+		Pf6N2E2_2622	0.43	-0.7
3,082,669	+		Pf6N2E2_2622	0.43	-1.2
3,082,670	-		Pf6N2E2_2622	0.43	-0.0
3,082,831	+		Pf6N2E2_2622	0.54	+0.3
3,082,870	-		Pf6N2E2_2622	0.56	+0.3
3,082,898	-		Pf6N2E2_2622	0.58	-0.7
3,082,898	-		Pf6N2E2_2622	0.58	-0.2
3,082,899	+		Pf6N2E2_2622	0.58	+0.3
3,082,899	+		Pf6N2E2_2622	0.58	-0.3
3,082,899	+		Pf6N2E2_2622	0.58	+0.3
3,082,900	-		Pf6N2E2_2622	0.58	-0.7
3,082,900	-		Pf6N2E2_2622	0.58	+0.3
3,082,900	-		Pf6N2E2_2622	0.58	-0.1
3,082,900	-		Pf6N2E2_2622	0.58	-0.2
3,083,088	+		Pf6N2E2_2622	0.70	-0.7
3,083,089	-		Pf6N2E2_2622	0.70	+0.3
3,083,089	-		Pf6N2E2_2622	0.70	-0.7
3,083,089	-		Pf6N2E2_2622	0.70	+0.2
3,083,089	-		Pf6N2E2_2622	0.70	+1.3
3,083,089	-		Pf6N2E2_2622	0.70	-2.0
3,083,094	+		Pf6N2E2_2622	0.71	-0.7
3,083,094	+		Pf6N2E2_2622	0.71	-0.5
3,083,094	+		Pf6N2E2_2622	0.71	+0.3
3,083,094	+		Pf6N2E2_2622	0.71	+0.3
3,083,095	-		Pf6N2E2_2622	0.71	+0.3
3,083,095	-		Pf6N2E2_2622	0.71	-0.8
3,083,095	-		Pf6N2E2_2622	0.71	+0.3
3,083,154	+		Pf6N2E2_2622	0.74	+0.3
3,083,154	+		Pf6N2E2_2622	0.74	+0.3
3,083,154	+		Pf6N2E2_2622	0.74	+0.3
3,083,154	+		Pf6N2E2_2622	0.74	-1.9
3,083,155	-		Pf6N2E2_2622	0.74	+1.0
3,083,155	-		Pf6N2E2_2622	0.74	-0.0
3,083,155	-		Pf6N2E2_2622	0.74	+0.2
3,083,155	-		Pf6N2E2_2622	0.74	-0.1
3,083,155	-		Pf6N2E2_2622	0.74	+0.3
3,083,155	-		Pf6N2E2_2622	0.74	+0.3
3,083,333	-		Pf6N2E2_2622	0.86	-0.7
3,083,508	+				+0.3
3,083,509	-				+0.3
3,083,542	+				-1.7
3,083,543	-				-0.7
3,083,543	-				+0.3
3,083,635	+				+0.3
3,083,635	+				-1.1
3,083,635	+				-1.2
3,083,636	-				+0.3
3,083,636	-				+0.3
3,083,638	+				+0.3
3,083,639	-				+2.3
3,083,797	+		Pf6N2E2_2623	0.11	-0.3
3,083,816	+		Pf6N2E2_2623	0.12	-0.7
3,083,816	+		Pf6N2E2_2623	0.12	-0.7
3,083,918	+		Pf6N2E2_2623	0.17	+0.3
3,083,918	+		Pf6N2E2_2623	0.17	+0.3
3,083,919	-		Pf6N2E2_2623	0.17	+0.0
3,083,919	-		Pf6N2E2_2623	0.17	+0.3
3,083,961	-		Pf6N2E2_2623	0.19	+0.3
3,084,078	-		Pf6N2E2_2623	0.25	-1.2
3,084,220	+		Pf6N2E2_2623	0.32	-1.2
3,084,220	+		Pf6N2E2_2623	0.32	-0.7
3,084,220	+		Pf6N2E2_2623	0.32	+0.3
3,084,220	+		Pf6N2E2_2623	0.32	+0.3
3,084,220	+		Pf6N2E2_2623	0.32	+0.3
3,084,220	+		Pf6N2E2_2623	0.32	-0.7
3,084,220	+		Pf6N2E2_2623	0.32	+0.3
3,084,220	+		Pf6N2E2_2623	0.32	+0.3
3,084,220	+		Pf6N2E2_2623	0.32	-0.4
3,084,220	+		Pf6N2E2_2623	0.32	-0.7
3,084,220	+		Pf6N2E2_2623	0.32	-0.7
3,084,220	+				-0.7
3,084,220	+		Pf6N2E2_2623	0.32	+0.6
3,084,221	-		Pf6N2E2_2623	0.32	+0.3
3,084,221	-		Pf6N2E2_2623	0.32	+0.3
3,084,221	-		Pf6N2E2_2623	0.32	+0.3
3,084,221	-		Pf6N2E2_2623	0.32	+0.8
3,084,221	-		Pf6N2E2_2623	0.32	+0.3
3,084,221	-		Pf6N2E2_2623	0.32	-0.7
3,084,221	-		Pf6N2E2_2623	0.32	-1.2
3,084,221	-		Pf6N2E2_2623	0.32	-0.7
3,084,221	-		Pf6N2E2_2623	0.32	-0.1
3,084,221	-		Pf6N2E2_2623	0.32	+0.3
3,084,221	-		Pf6N2E2_2623	0.32	-1.2
3,084,221	-		Pf6N2E2_2623	0.32	-1.7
3,084,221	-		Pf6N2E2_2623	0.32	+0.3
3,084,221	-		Pf6N2E2_2623	0.32	+0.3
3,084,221	-		Pf6N2E2_2623	0.32	+0.4
3,084,510	+		Pf6N2E2_2623	0.46	+0.3
3,084,510	+		Pf6N2E2_2623	0.46	+0.3
3,084,511	-		Pf6N2E2_2623	0.46	+0.2
3,084,511	-		Pf6N2E2_2623	0.46	+0.3
3,084,517	+		Pf6N2E2_2623	0.46	+0.1
3,084,517	+		Pf6N2E2_2623	0.46	+0.6
3,084,518	-		Pf6N2E2_2623	0.46	+0.2
3,084,518	-		Pf6N2E2_2623	0.46	-0.7
3,084,518	-		Pf6N2E2_2623	0.46	+0.3
3,084,547	+		Pf6N2E2_2623	0.47	-0.7
3,084,964	+		Pf6N2E2_2623	0.68	+0.3
3,084,964	+		Pf6N2E2_2623	0.68	+0.3
3,084,965	-		Pf6N2E2_2623	0.68	-0.0
3,084,965	-		Pf6N2E2_2623	0.68	-0.1
3,084,965	-		Pf6N2E2_2623	0.68	-0.8
3,085,429	+				+0.3
3,085,436	+				+0.3
3,085,437	-				-0.7
3,085,437	-				-0.7
3,085,437	-				+0.6
3,085,437	-				+0.3
3,085,437	-				+0.3
3,085,437	-				+0.3
3,085,438	+				-1.2
3,085,438	+				+0.3
3,085,438	+				+1.2
3,085,438	+				-0.7
3,085,438	+				+0.3
3,085,439	-				+0.3
3,085,537	+				+0.3
3,085,617	+				-0.1
3,085,617	+				-0.7
3,085,617	+				+0.3
3,085,617	+				+0.3
3,085,617	+				+0.3
3,085,617	+				-0.7
3,085,617	+				-0.7
3,085,618	-				+0.3
3,085,618	-				+0.3
3,085,618	-				+0.3
3,085,618	-				+0.3
3,085,618	-				-0.7
3,085,618	-				+0.3
3,085,620	-				-0.7
3,085,646	+				+0.3
3,085,646	+				-1.2
3,085,647	-				+0.3
3,085,647	-				-0.7
3,085,647	-				+0.3
3,085,647	-				-1.0
3,085,648	+				+0.3
3,085,648	+				+0.4
3,085,648	+				+0.3
3,085,648	+				-0.7
3,085,649	-				-0.6
3,085,649	-				-0.7
3,085,649	-				-0.7
3,085,705	+				+0.8
3,085,705	+				+0.3
3,085,706	-				-0.5
3,085,727	+				+1.9
3,085,728	-				-0.7
3,085,728	-				+1.3
3,085,745	+				-1.2
3,085,863	-		Pf6N2E2_2624	0.17	-0.7
3,085,872	-		Pf6N2E2_2624	0.17	+0.3
3,085,872	-		Pf6N2E2_2624	0.17	-0.7
3,086,061	-		Pf6N2E2_2624	0.32	+1.2
3,086,189	+		Pf6N2E2_2624	0.42	+0.6
3,086,448	+		Pf6N2E2_2624	0.62	+0.3
3,086,520	+		Pf6N2E2_2624	0.67	-0.7
3,086,520	+		Pf6N2E2_2624	0.67	-0.7
3,086,521	-		Pf6N2E2_2624	0.67	-1.2
3,086,521	-		Pf6N2E2_2624	0.67	+1.0
3,086,521	-		Pf6N2E2_2624	0.67	-0.2
3,086,521	-		Pf6N2E2_2624	0.67	-0.7