Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2317

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
2,739,195	-		Pf6N2E2_2316	0.42	+0.3
2,739,263	-		Pf6N2E2_2316	0.47	-0.7
2,739,263	-		Pf6N2E2_2316	0.47	-0.7
2,739,266	+		Pf6N2E2_2316	0.47	-0.8
2,739,266	+		Pf6N2E2_2316	0.47	-0.5
2,739,266	+		Pf6N2E2_2316	0.47	+0.3
2,739,266	+		Pf6N2E2_2316	0.47	-0.5
2,739,267	-		Pf6N2E2_2316	0.47	+0.3
2,739,380	+		Pf6N2E2_2316	0.55	+0.3
2,739,533	+		Pf6N2E2_2316	0.66	+0.3
2,739,555	-		Pf6N2E2_2316	0.68	+0.3
2,739,555	-		Pf6N2E2_2316	0.68	-1.3
2,739,592	+		Pf6N2E2_2316	0.70	-1.2
2,739,627	+		Pf6N2E2_2316	0.73	-0.7
2,739,708	+		Pf6N2E2_2316	0.78	+0.3
2,739,708	+		Pf6N2E2_2316	0.78	-0.7
2,739,709	-		Pf6N2E2_2316	0.79	-1.5
2,739,709	-		Pf6N2E2_2316	0.79	-1.4
2,739,787	+		Pf6N2E2_2316	0.84	-0.7
2,739,787	+		Pf6N2E2_2316	0.84	+0.3
2,739,787	+		Pf6N2E2_2316	0.84	+0.0
2,739,788	-		Pf6N2E2_2316	0.84	-2.0
2,739,788	-		Pf6N2E2_2316	0.84	-2.4
2,739,788	-		Pf6N2E2_2316	0.84	-2.1
2,739,788	-		Pf6N2E2_2316	0.84	-2.3
2,739,788	-		Pf6N2E2_2316	0.84	-1.7
2,739,788	-		Pf6N2E2_2316	0.84	-2.5
2,739,791	+		Pf6N2E2_2316	0.84	-1.7
2,739,791	+		Pf6N2E2_2316	0.84	+0.3
2,739,791	+		Pf6N2E2_2316	0.84	+0.3
2,739,791	+		Pf6N2E2_2316	0.84	-1.0
2,739,791	+		Pf6N2E2_2316	0.84	-0.4
2,739,791	+		Pf6N2E2_2316	0.84	-1.2
2,739,791	+		Pf6N2E2_2316	0.84	-0.6
2,739,791	+		Pf6N2E2_2316	0.84	-0.7
2,739,791	+		Pf6N2E2_2316	0.84	-1.0
2,739,791	+		Pf6N2E2_2316	0.84	+0.6
2,739,792	-		Pf6N2E2_2316	0.84	-2.5
2,739,792	-		Pf6N2E2_2316	0.84	-2.5
2,739,792	-		Pf6N2E2_2316	0.84	-2.9
2,739,792	-		Pf6N2E2_2316	0.84	-2.1
2,739,792	-		Pf6N2E2_2316	0.84	-2.5
2,739,792	-		Pf6N2E2_2316	0.84	-2.5
2,739,792	-		Pf6N2E2_2316	0.84	-0.7
2,739,792	-		Pf6N2E2_2316	0.84	-1.7
2,739,869	+		Pf6N2E2_2316	0.90	+0.3
2,739,870	-		Pf6N2E2_2316	0.90	-1.6
2,739,870	-		Pf6N2E2_2316	0.90	-1.9
2,739,870	-		Pf6N2E2_2316	0.90	-2.2
2,739,870	-		Pf6N2E2_2316	0.90	-1.0
2,739,966	+				-0.7
2,739,966	+				+0.3
2,739,967	-				-1.7
2,739,967	-				+0.3
2,740,054	+				+0.3
2,740,054	+				-0.2
2,740,055	-				-4.6
2,740,055	-				-2.8
2,740,055	-				-3.7
2,740,168	+		Pf6N2E2_2317	0.27	-1.7
2,740,168	+		Pf6N2E2_2317	0.27	-3.0
2,740,168	+		Pf6N2E2_2317	0.27	-1.7
2,740,168	+		Pf6N2E2_2317	0.27	-1.5
2,740,169	-		Pf6N2E2_2317	0.27	-3.0
2,740,169	-		Pf6N2E2_2317	0.27	-3.1
2,740,171	+		Pf6N2E2_2317	0.27	+0.3
2,740,171	+		Pf6N2E2_2317	0.27	-1.2
2,740,172	-		Pf6N2E2_2317	0.27	-4.3
2,740,263	+		Pf6N2E2_2317	0.44	-3.7
2,740,561	+				+0.3
2,740,561	+				-0.6
2,740,561	+				+0.3
2,740,625	+				+0.3
2,740,625	+				+0.3
2,740,625	+				-1.7
2,740,764	+				-2.9
2,740,893	+				-2.2
2,740,896	+				-3.2
2,740,896	+				-2.9
2,740,897	-				-2.9
2,740,897	-				-3.1
2,740,968	+				-3.4
2,740,968	+				-2.7
2,740,968	+				-2.2
2,740,969	-				-3.1
2,740,969	-				-2.9
2,740,969	-				-3.6
2,740,969	-				-3.4
2,740,969	-				-2.9
2,741,086	+		Pf6N2E2_2318	0.14	-2.9
2,741,086	+		Pf6N2E2_2318	0.14	-3.5
2,741,087	-		Pf6N2E2_2318	0.14	-2.9
2,741,087	-		Pf6N2E2_2318	0.14	-2.7
2,741,146	+		Pf6N2E2_2318	0.16	-3.3
2,741,146	+		Pf6N2E2_2318	0.16	-3.9
2,741,147	-		Pf6N2E2_2318	0.16	-3.0
2,741,147	-		Pf6N2E2_2318	0.16	-2.8
2,741,147	-		Pf6N2E2_2318	0.16	-3.0
2,741,147	-		Pf6N2E2_2318	0.16	-3.3
2,741,424	+		Pf6N2E2_2318	0.28	-3.0
2,741,424	+				-2.5
2,741,424	+		Pf6N2E2_2318	0.28	-3.6
2,741,424	+		Pf6N2E2_2318	0.28	-3.4
2,741,424	+		Pf6N2E2_2318	0.28	-3.5
2,741,425	-		Pf6N2E2_2318	0.28	-3.0
2,741,425	-		Pf6N2E2_2318	0.28	-2.6
2,741,425	-		Pf6N2E2_2318	0.28	-3.6
2,741,425	-		Pf6N2E2_2318	0.28	-2.9
2,741,425	-		Pf6N2E2_2318	0.28	-3.4
2,741,425	-		Pf6N2E2_2318	0.28	-3.6
2,741,426	+		Pf6N2E2_2318	0.28	-2.3
2,741,520	+		Pf6N2E2_2318	0.32	-3.3
2,741,520	+		Pf6N2E2_2318	0.32	-3.3
2,741,520	+		Pf6N2E2_2318	0.32	-3.4
2,741,547	-		Pf6N2E2_2318	0.33	-3.8