Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_228

Experiment: Ying_AminoAcid20 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_227 and Pf6N2E2_228 are separated by 21 nucleotidesPf6N2E2_228 and Pf6N2E2_229 are separated by 2 nucleotides Pf6N2E2_227 - 3-(3-hydroxy-phenyl)propionate hydroxylase (EC 1.14.13.-), at 288,729 to 290,375 _227 Pf6N2E2_228 - Transcriptional regulator, IclR family, at 290,397 to 291,218 _228 Pf6N2E2_229 - Putative fumarylacetoacetate (FAA) hydrolase, at 291,221 to 292,072 _229 Position (kb) 290 291 292Strain fitness (log2 ratio) -2 -1 0 1at 289.489 kb on + strand, within Pf6N2E2_227at 289.489 kb on + strand, within Pf6N2E2_227at 289.574 kb on - strand, within Pf6N2E2_227at 289.574 kb on - strand, within Pf6N2E2_227at 289.574 kb on - strand, within Pf6N2E2_227at 289.574 kb on - strand, within Pf6N2E2_227at 289.750 kb on + strand, within Pf6N2E2_227at 289.750 kb on + strand, within Pf6N2E2_227at 289.888 kb on + strand, within Pf6N2E2_227at 289.888 kb on + strand, within Pf6N2E2_227at 289.889 kb on - strand, within Pf6N2E2_227at 289.941 kb on + strand, within Pf6N2E2_227at 289.942 kb on - strand, within Pf6N2E2_227at 290.078 kb on - strand, within Pf6N2E2_227at 290.134 kb on + strand, within Pf6N2E2_227at 290.134 kb on + strand, within Pf6N2E2_227at 290.134 kb on + strand, within Pf6N2E2_227at 290.134 kb on + strand, within Pf6N2E2_227at 290.135 kb on - strand, within Pf6N2E2_227at 290.135 kb on - strand, within Pf6N2E2_227at 290.135 kb on - strand, within Pf6N2E2_227at 290.135 kb on - strandat 290.379 kb on + strandat 290.379 kb on + strandat 290.582 kb on - strand, within Pf6N2E2_228at 290.618 kb on - strand, within Pf6N2E2_228at 290.618 kb on - strand, within Pf6N2E2_228at 290.618 kb on - strand, within Pf6N2E2_228at 290.618 kb on - strand, within Pf6N2E2_228at 290.618 kb on - strand, within Pf6N2E2_228at 290.618 kb on - strand, within Pf6N2E2_228at 290.801 kb on - strand, within Pf6N2E2_228at 290.970 kb on - strand, within Pf6N2E2_228at 290.993 kb on - strand, within Pf6N2E2_228at 290.993 kb on - strand, within Pf6N2E2_228at 291.208 kb on - strandat 291.208 kb on - strandat 291.208 kb on - strandat 291.208 kb on - strandat 291.208 kb on - strandat 291.208 kb on - strandat 291.208 kb on - strandat 291.223 kb on - strandat 291.607 kb on - strand, within Pf6N2E2_229at 291.607 kb on - strand, within Pf6N2E2_229at 291.607 kb on - strand, within Pf6N2E2_229at 291.784 kb on - strand, within Pf6N2E2_229at 291.826 kb on - strand, within Pf6N2E2_229at 292.032 kb on + strandat 292.032 kb on + strandat 292.032 kb on + strandat 292.032 kb on + strandat 292.033 kb on - strandat 292.036 kb on + strandat 292.037 kb on - strandat 292.037 kb on - strandat 292.039 kb on + strandat 292.055 kb on - strandat 292.055 kb on - strandat 292.110 kb on - strandat 292.196 kb on - strandat 292.196 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3
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289,489 + Pf6N2E2_227 0.46 -0.8
289,489 + Pf6N2E2_227 0.46 -0.7
289,574 - Pf6N2E2_227 0.51 -1.3
289,574 - Pf6N2E2_227 0.51 -1.4
289,574 - Pf6N2E2_227 0.51 -0.7
289,574 - Pf6N2E2_227 0.51 -1.3
289,750 + Pf6N2E2_227 0.62 -0.7
289,750 + Pf6N2E2_227 0.62 -0.7
289,888 + Pf6N2E2_227 0.70 +0.3
289,888 + Pf6N2E2_227 0.70 -0.7
289,889 - Pf6N2E2_227 0.70 -0.3
289,941 + Pf6N2E2_227 0.74 +0.3
289,942 - Pf6N2E2_227 0.74 -0.4
290,078 - Pf6N2E2_227 0.82 -0.8
290,134 + Pf6N2E2_227 0.85 +0.3
290,134 + Pf6N2E2_227 0.85 +0.3
290,134 + Pf6N2E2_227 0.85 -0.7
290,134 + Pf6N2E2_227 0.85 +0.3
290,135 - Pf6N2E2_227 0.85 -1.3
290,135 - Pf6N2E2_227 0.85 -0.1
290,135 - Pf6N2E2_227 0.85 -0.5
290,135 - -0.7
290,379 + +0.3
290,379 + -0.7
290,582 - Pf6N2E2_228 0.23 -0.5
290,618 - Pf6N2E2_228 0.27 +0.3
290,618 - Pf6N2E2_228 0.27 -1.3
290,618 - Pf6N2E2_228 0.27 -1.0
290,618 - Pf6N2E2_228 0.27 +0.3
290,618 - Pf6N2E2_228 0.27 +0.3
290,618 - Pf6N2E2_228 0.27 +0.3
290,801 - Pf6N2E2_228 0.49 +0.3
290,970 - Pf6N2E2_228 0.70 +0.3
290,993 - Pf6N2E2_228 0.73 -0.7
290,993 - Pf6N2E2_228 0.73 +0.3
291,208 - -1.3
291,208 - -0.7
291,208 - +0.3
291,208 - -0.7
291,208 - +0.3
291,208 - -0.7
291,208 - -0.3
291,223 - +0.3
291,607 - Pf6N2E2_229 0.45 -0.7
291,607 - Pf6N2E2_229 0.45 +0.3
291,607 - Pf6N2E2_229 0.45 +0.3
291,784 - Pf6N2E2_229 0.66 -2.0
291,826 - Pf6N2E2_229 0.71 -1.6
292,032 + +0.3
292,032 + -0.7
292,032 + -0.7
292,032 + +0.3
292,033 - -0.9
292,036 + -0.7
292,037 - -0.7
292,037 - +0.3
292,039 + +0.3
292,055 - -1.3
292,055 - -0.7
292,110 - +1.3
292,196 - +0.3
292,196 - -0.8

Or see this region's nucleotide sequence