Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2253

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
2,666,249	-		Pf6N2E2_2251	0.63	+0.3
2,666,307	+		Pf6N2E2_2251	0.69	+0.3
2,666,308	-		Pf6N2E2_2251	0.69	-0.7
2,666,346	+		Pf6N2E2_2251	0.74	-0.7
2,666,347	-		Pf6N2E2_2251	0.74	+0.3
2,666,347	-		Pf6N2E2_2251	0.74	-0.7
2,666,347	-		Pf6N2E2_2251	0.74	+0.3
2,666,409	-		Pf6N2E2_2251	0.81	-0.7
2,666,409	-		Pf6N2E2_2251	0.81	+0.3
2,666,526	+				-0.7
2,666,527	-				+0.3
2,666,527	-				+0.3
2,666,527	-				-0.7
2,666,588	-				+0.3
2,666,588	-				+0.3
2,666,593	+				-0.6
2,666,593	+				-1.7
2,666,593	+				+0.3
2,666,593	+				-0.4
2,666,594	-				+0.3
2,666,594	-				-0.3
2,666,594	-				+0.3
2,666,594	-				-0.5
2,666,676	+		Pf6N2E2_2252	0.31	-0.9
2,666,677	-		Pf6N2E2_2252	0.32	+0.3
2,666,677	-		Pf6N2E2_2252	0.32	+0.3
2,666,677	-		Pf6N2E2_2252	0.32	-0.7
2,666,677	-		Pf6N2E2_2252	0.32	+0.3
2,666,677	-		Pf6N2E2_2252	0.32	+0.3
2,666,677	-		Pf6N2E2_2252	0.32	-0.5
2,666,677	-		Pf6N2E2_2252	0.32	+0.3
2,666,783	+		Pf6N2E2_2252	0.68	-0.9
2,666,784	-		Pf6N2E2_2252	0.69	+0.3
2,666,901	+				+0.3
2,666,902	-				+0.3
2,666,902	-				-0.7
2,666,978	+				+0.3
2,666,978	+				-0.5
2,666,978	+				+0.3
2,666,979	-				-0.7
2,666,979	-				+0.3
2,667,021	+				-0.8
2,667,076	+				-0.7
2,667,076	+				-0.7
2,667,076	+				+0.3
2,667,077	-				+0.3
2,667,099	+				-1.3
2,667,099	+				+0.3
2,667,099	+				+0.3
2,667,101	+				-0.7
2,667,102	-				+0.3
2,667,144	+				+0.3
2,667,169	+		Pf6N2E2_2253	0.19	+0.3
2,667,169	+		Pf6N2E2_2253	0.19	-0.7
2,667,186	+		Pf6N2E2_2253	0.29	-2.0
2,667,196	+		Pf6N2E2_2253	0.35	+0.3
2,667,197	-		Pf6N2E2_2253	0.36	-0.7
2,667,197	-		Pf6N2E2_2253	0.36	-0.7
2,667,318	+				+0.3
2,667,318	+				-2.8
2,667,318	+				+0.3
2,667,318	+				-0.3
2,667,319	-				+0.3
2,667,319	-				+0.3
2,667,319	-				+0.3
2,667,340	-				-1.7
2,667,340	-				+0.3
2,667,401	-		Pf6N2E2_2254	0.16	+0.3
2,667,466	-		Pf6N2E2_2254	0.27	+0.3
2,667,466	-		Pf6N2E2_2254	0.27	+0.3
2,667,478	-		Pf6N2E2_2254	0.29	+0.3
2,667,585	+		Pf6N2E2_2254	0.47	+0.3
2,667,585	+		Pf6N2E2_2254	0.47	+0.3
2,667,585	+		Pf6N2E2_2254	0.47	-0.5
2,667,585	+		Pf6N2E2_2254	0.47	-0.7
2,667,586	-				+0.3
2,667,706	+		Pf6N2E2_2254	0.67	+0.3
2,667,707	-		Pf6N2E2_2254	0.67	-0.7
2,667,707	-		Pf6N2E2_2254	0.67	+0.3
2,667,837	+		Pf6N2E2_2254	0.89	+0.3
2,667,837	+		Pf6N2E2_2254	0.89	+0.3
2,667,937	+				+0.3
2,668,101	+				-0.7
2,668,176	+				-0.7
2,668,276	+				+0.3