Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1808

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
2,138,886	+		Pf6N2E2_1807	0.70	+0.2
2,138,977	+		Pf6N2E2_1807	0.74	-0.8
2,139,018	+		Pf6N2E2_1807	0.76	-0.8
2,139,018	+		Pf6N2E2_1807	0.76	-1.3
2,139,019	-		Pf6N2E2_1807	0.76	-0.2
2,139,079	-		Pf6N2E2_1807	0.78	-0.8
2,139,079	-		Pf6N2E2_1807	0.78	-0.8
2,139,101	+		Pf6N2E2_1807	0.79	+0.2
2,139,102	-		Pf6N2E2_1807	0.79	+0.2
2,139,102	-		Pf6N2E2_1807	0.79	+0.2
2,139,158	-		Pf6N2E2_1807	0.82	+0.2
2,139,312	-		Pf6N2E2_1807	0.89	+0.2
2,139,331	+		Pf6N2E2_1807	0.89	-1.3
2,139,405	+				-0.8
2,139,406	-				+0.2
2,139,406	-				+0.2
2,139,554	-				+0.2
2,139,688	-				-0.6
2,139,816	-		Pf6N2E2_1808	0.21	+0.2
2,139,839	+		Pf6N2E2_1808	0.23	+0.2
2,139,840	-		Pf6N2E2_1808	0.24	+0.2
2,139,840	-		Pf6N2E2_1808	0.24	+0.2
2,139,841	+		Pf6N2E2_1808	0.24	-0.8
2,139,856	+		Pf6N2E2_1808	0.25	-1.3
2,139,856	+		Pf6N2E2_1808	0.25	+0.2
2,139,857	-		Pf6N2E2_1808	0.25	+0.2
2,139,857	-		Pf6N2E2_1808	0.25	-0.3
2,139,861	-		Pf6N2E2_1808	0.26	+0.2
2,140,175	-		Pf6N2E2_1808	0.60	+0.2
2,140,210	+		Pf6N2E2_1808	0.64	+1.2
2,140,615	-				+0.2
2,140,615	-				-0.9
2,140,656	+				+0.2
2,140,817	+				-0.8
2,140,818	-				+0.2
2,140,866	+				+0.2
2,140,938	-		Pf6N2E2_1809	0.14	+0.2
2,141,067	-		Pf6N2E2_1809	0.23	+0.2
2,141,067	-		Pf6N2E2_1809	0.23	-0.5
2,141,067	-		Pf6N2E2_1809	0.23	+0.2
2,141,145	-		Pf6N2E2_1809	0.28	-1.3
2,141,229	-		Pf6N2E2_1809	0.33	-1.2
2,141,343	-		Pf6N2E2_1809	0.41	-0.8
2,141,343	-		Pf6N2E2_1809	0.41	-0.8
2,141,488	+		Pf6N2E2_1809	0.50	+0.2