Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1502

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
1,754,611	+		Pf6N2E2_1500	0.60	+0.3
1,754,612	-		Pf6N2E2_1500	0.60	+0.3
1,754,669	-		Pf6N2E2_1500	0.67	+0.3
1,754,725	+		Pf6N2E2_1500	0.73	+0.3
1,754,866	+		Pf6N2E2_1500	0.90	+0.3
1,754,866	+		Pf6N2E2_1500	0.90	-0.5
1,754,866	+		Pf6N2E2_1500	0.90	+0.3
1,754,866	+		Pf6N2E2_1500	0.90	+0.3
1,754,866	+				+0.3
1,754,866	+		Pf6N2E2_1500	0.90	+0.3
1,754,867	-		Pf6N2E2_1500	0.90	-0.6
1,754,867	-		Pf6N2E2_1500	0.90	-0.8
1,754,889	+				+0.3
1,754,890	-				-0.4
1,754,904	-				+0.3
1,754,918	-				-0.7
1,754,918	-				-0.7
1,754,918	-				+0.3
1,754,979	-				-0.5
1,755,123	+		Pf6N2E2_1501	0.30	-0.7
1,755,123	+		Pf6N2E2_1501	0.30	-0.7
1,755,123	+		Pf6N2E2_1501	0.30	-0.7
1,755,124	-		Pf6N2E2_1501	0.30	-0.7
1,755,355	-		Pf6N2E2_1501	0.82	+0.3
1,755,414	+				+0.3
1,755,414	+				-0.8
1,755,414	+				+0.3
1,755,454	+				-0.7
1,755,454	+				-1.3
1,755,486	+				-0.7
1,755,486	+				-2.2
1,755,486	+				-0.7
1,755,486	+				+0.3
1,755,487	-				+0.1
1,755,715	+		Pf6N2E2_1502	0.45	-2.3
1,755,715	+		Pf6N2E2_1502	0.45	+0.3
1,755,932	+				+0.3
1,755,933	-				-0.7
1,756,001	+				-0.1
1,756,005	+				-2.5
1,756,005	+				-0.7
1,756,005	+				+0.3
1,756,005	+				+0.3
1,756,006	-				+0.3
1,756,199	+		Pf6N2E2_1503	0.12	-0.6
1,756,199	+		Pf6N2E2_1503	0.12	-0.2
1,756,240	-		Pf6N2E2_1503	0.14	+0.3
1,756,240	-		Pf6N2E2_1503	0.14	+0.3
1,756,240	-		Pf6N2E2_1503	0.14	-0.7
1,756,759	-		Pf6N2E2_1503	0.37	-0.7
1,756,839	-		Pf6N2E2_1503	0.41	+0.3
1,756,839	-		Pf6N2E2_1503	0.41	+0.3