Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1445

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
1,694,386	+		Pf6N2E2_1444	0.22	-0.7
1,694,706	+		Pf6N2E2_1444	0.58	+0.3
1,694,706	+		Pf6N2E2_1444	0.58	+0.3
1,694,707	-		Pf6N2E2_1444	0.58	+0.3
1,694,805	+		Pf6N2E2_1444	0.69	-1.3
1,694,805	+		Pf6N2E2_1444	0.69	+0.3
1,694,806	-		Pf6N2E2_1444	0.69	-1.0
1,695,006	+				-1.2
1,695,007	-				-0.3
1,695,007	-				+0.3
1,695,009	+				+0.3
1,695,010	-				+0.3
1,695,133	+				+0.3
1,695,133	+				+0.3
1,695,133	+				+0.5
1,695,134	-				-0.7
1,695,417	-		Pf6N2E2_1445	0.32	-0.7
1,695,470	-		Pf6N2E2_1445	0.41	+0.3
1,695,617	-		Pf6N2E2_1445	0.65	+0.3
1,695,691	+		Pf6N2E2_1445	0.77	-1.3
1,695,785	-				+0.3
1,695,796	+				+0.3
1,695,796	+				+0.3
1,695,797	-				-0.4
1,695,847	+				+0.3
1,695,860	-				-2.3
1,695,871	+				+0.3
1,695,879	+				+0.3
1,695,879	+				+0.3
1,695,879	+				+0.3
1,695,880	-				-0.7
1,695,898	+				-0.7
1,695,916	+				+0.3
1,695,916	+				+0.7
1,695,916	+				+0.3
1,695,916	+				+0.3
1,695,916	+				+0.3
1,695,917	-				+0.3
1,695,920	-				+0.3
1,695,920	-				+0.3
1,695,991	-				+0.3
1,695,991	-				+0.3
1,696,147	-		Pf6N2E2_1446	0.10	+0.3
1,696,375	-		Pf6N2E2_1446	0.41	-0.6
1,696,375	-		Pf6N2E2_1446	0.41	+0.3
1,696,476	+		Pf6N2E2_1446	0.54	+0.3
1,696,477	-		Pf6N2E2_1446	0.54	-0.7
1,696,719	-		Pf6N2E2_1446	0.86	+0.3
1,696,798	+				-0.9
1,696,798	+				+0.3
1,696,799	-				+0.3
1,696,799	-				-0.5
1,696,799	-				+0.3
1,696,799	-				-0.7
1,696,799	-				-1.0
1,696,799	-				-0.7
1,696,799	-				+0.3
1,696,799	-				-1.3
1,696,799	-				+0.3
1,696,805	-				+0.3
1,696,805	-				-0.7
1,696,805	-				-0.7
1,696,805	-				+0.3