Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5690

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
6,503,278	-		Pf6N2E2_5688	0.51	-0.6
6,503,307	+		Pf6N2E2_5688	0.55	-0.4
6,503,490	+		Pf6N2E2_5688	0.80	-1.2
6,503,490	+		Pf6N2E2_5688	0.80	-0.6
6,503,491	-		Pf6N2E2_5688	0.80	+0.4
6,503,491	-		Pf6N2E2_5688	0.80	-1.2
6,503,491	-		Pf6N2E2_5688	0.80	-1.2
6,503,509	+		Pf6N2E2_5688	0.82	-1.2
6,503,509	+		Pf6N2E2_5688	0.82	+0.4
6,503,510	-		Pf6N2E2_5688	0.82	-0.3
6,503,665	+				+0.4
6,503,665	+				-0.5
6,503,665	+				+0.4
6,503,665	+				+0.4
6,503,666	-				+0.4
6,503,666	-				+0.4
6,503,666	-				+0.4
6,503,666	-				+0.6
6,503,666	-				+0.4
6,503,666	-				+0.4
6,503,700	-				-0.6
6,503,700	-				-0.0
6,503,712	+				+0.4
6,503,712	+				-0.6
6,503,712	+				+0.1
6,503,793	-		Pf6N2E2_5689	0.13	+0.3
6,503,917	+		Pf6N2E2_5689	0.39	+0.4
6,503,918	-		Pf6N2E2_5689	0.39	-0.8
6,503,918	-		Pf6N2E2_5689	0.39	+0.4
6,504,078	+		Pf6N2E2_5689	0.74	-1.2
6,504,079	-		Pf6N2E2_5689	0.74	-0.6
6,504,142	+		Pf6N2E2_5689	0.87	-2.2
6,504,184	+				+0.8
6,504,184	+				+0.4
6,504,184	+				+0.4
6,504,184	+				+0.4
6,504,219	-				+0.4
6,504,585	-				+0.4
6,504,638	+				-0.6
6,504,639	-				+0.4
6,504,678	-				+0.1
6,504,678	-				-0.6
6,504,689	+				+0.4
6,504,690	-				-1.2
6,504,720	+				+0.4
6,504,721	-				+0.4
6,504,721	-				+0.4
6,504,721	-				+0.4
6,504,721	-				-0.6
6,504,721	-				-0.1
6,504,740	+				-1.1
6,504,740	+				-0.6
6,504,740	+				-1.2
6,504,740	+				+0.4
6,504,741	-				-0.5
6,504,741	-				+0.4
6,504,741	-				+0.4
6,504,741	-				+0.4
6,504,741	-				-0.6
6,504,741	-				-0.5
6,504,741	-				-1.2
6,504,817	+		Pf6N2E2_5691	0.10	-0.2
6,504,817	+		Pf6N2E2_5691	0.10	-0.6
6,504,818	-		Pf6N2E2_5691	0.10	+1.0
6,505,314	+		Pf6N2E2_5691	0.75	-2.2
6,505,322	+		Pf6N2E2_5691	0.76	+0.8
6,505,322	+		Pf6N2E2_5691	0.76	+0.8
6,505,322	+		Pf6N2E2_5691	0.76	+2.3
6,505,322	+		Pf6N2E2_5691	0.76	+0.2
6,505,322	+		Pf6N2E2_5691	0.76	+0.4
6,505,323	-		Pf6N2E2_5691	0.76	-1.2
6,505,330	+		Pf6N2E2_5691	0.77	+0.4
6,505,330	+		Pf6N2E2_5691	0.77	+0.4
6,505,330	+		Pf6N2E2_5691	0.77	+0.1
6,505,330	+		Pf6N2E2_5691	0.77	+1.0
6,505,330	+		Pf6N2E2_5691	0.77	+1.0
6,505,366	-		Pf6N2E2_5691	0.82	+1.2
6,505,384	-		Pf6N2E2_5691	0.84	-0.6
6,505,384	-		Pf6N2E2_5691	0.84	+0.8
6,505,559	+				-1.6
6,505,559	+				-0.6
6,505,566	-				+0.4