Experiment: Ying_AminoAcid20 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_491 and Pf6N2E2_492 are separated by 273 nucleotides Pf6N2E2_492 and Pf6N2E2_493 are separated by 55 nucleotides
Pf6N2E2_491 - hypothetical protein, at 558,482 to 558,835
_491
Pf6N2E2_492 - Transcriptional regulator RutR of pyrimidine catabolism (TetR family), at 559,109 to 559,729
_492
Pf6N2E2_493 - YD repeat protein, at 559,785 to 560,831
_493
Position (kb) 559
560 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 558.118 kb on - strand at 558.154 kb on + strand at 558.154 kb on + strand at 558.154 kb on + strand at 558.154 kb on + strand at 558.155 kb on - strand at 558.155 kb on - strand at 558.175 kb on + strand at 558.175 kb on + strand at 558.176 kb on - strand at 558.176 kb on - strand at 558.176 kb on - strand at 558.176 kb on - strand at 558.197 kb on + strand at 558.197 kb on + strand at 558.198 kb on - strand at 558.198 kb on - strand at 558.198 kb on - strand at 558.231 kb on + strand at 558.232 kb on - strand at 558.245 kb on + strand at 558.246 kb on - strand at 558.246 kb on - strand at 558.306 kb on - strand at 558.397 kb on + strand at 558.397 kb on + strand at 558.409 kb on + strand at 558.410 kb on - strand at 558.423 kb on + strand at 558.424 kb on - strand at 558.424 kb on - strand at 558.458 kb on + strand at 558.458 kb on + strand at 558.458 kb on + strand at 558.459 kb on - strand at 558.459 kb on - strand at 558.459 kb on - strand at 558.461 kb on + strand at 558.461 kb on + strand at 558.461 kb on + strand at 558.462 kb on - strand at 558.462 kb on - strand at 558.462 kb on - strand at 558.462 kb on - strand at 558.462 kb on - strand at 558.481 kb on + strand at 558.482 kb on - strand at 558.482 kb on - strand at 558.482 kb on - strand at 558.482 kb on - strand at 558.482 kb on - strand at 558.482 kb on - strand at 558.482 kb on - strand at 558.482 kb on - strand at 558.482 kb on - strand at 558.482 kb on - strand at 558.482 kb on - strand at 558.578 kb on + strand, within Pf6N2E2_491 at 558.578 kb on + strand, within Pf6N2E2_491 at 558.579 kb on - strand, within Pf6N2E2_491 at 558.579 kb on - strand, within Pf6N2E2_491 at 558.579 kb on - strand, within Pf6N2E2_491 at 558.581 kb on + strand, within Pf6N2E2_491 at 558.581 kb on + strand, within Pf6N2E2_491 at 558.582 kb on - strand, within Pf6N2E2_491 at 558.582 kb on - strand, within Pf6N2E2_491 at 558.582 kb on - strand, within Pf6N2E2_491 at 558.796 kb on - strand, within Pf6N2E2_491 at 558.870 kb on - strand at 558.870 kb on - strand at 558.900 kb on - strand at 558.998 kb on + strand at 558.998 kb on + strand at 558.998 kb on + strand at 558.999 kb on - strand at 558.999 kb on - strand at 558.999 kb on - strand at 558.999 kb on - strand at 558.999 kb on - strand at 559.018 kb on + strand at 559.018 kb on + strand at 559.019 kb on - strand at 559.141 kb on + strand at 559.142 kb on - strand at 559.256 kb on + strand, within Pf6N2E2_492 at 559.256 kb on + strand, within Pf6N2E2_492 at 559.257 kb on - strand, within Pf6N2E2_492 at 559.257 kb on - strand, within Pf6N2E2_492 at 559.259 kb on + strand, within Pf6N2E2_492 at 559.259 kb on + strand, within Pf6N2E2_492 at 559.260 kb on - strand, within Pf6N2E2_492 at 559.260 kb on - strand, within Pf6N2E2_492 at 559.260 kb on - strand, within Pf6N2E2_492 at 559.284 kb on - strand, within Pf6N2E2_492 at 559.284 kb on - strand, within Pf6N2E2_492 at 559.284 kb on - strand, within Pf6N2E2_492 at 559.284 kb on - strand, within Pf6N2E2_492 at 559.284 kb on - strand, within Pf6N2E2_492 at 559.750 kb on + strand at 559.751 kb on - strand at 559.751 kb on - strand at 559.758 kb on - strand at 560.132 kb on + strand, within Pf6N2E2_493 at 560.452 kb on + strand, within Pf6N2E2_493 at 560.452 kb on + strand, within Pf6N2E2_493 at 560.701 kb on - strand, within Pf6N2E2_493 at 560.701 kb on - strand, within Pf6N2E2_493 at 560.701 kb on - strand, within Pf6N2E2_493 at 560.701 kb on - strand, within Pf6N2E2_493 at 560.729 kb on - strand at 560.729 kb on - strand at 560.729 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3 remove 558,118 - +0.3 558,154 + +0.5 558,154 + -0.7 558,154 + -1.7 558,154 + +0.3 558,155 - +0.3 558,155 - -1.7 558,175 + +0.3 558,175 + +0.3 558,176 - -1.7 558,176 - -1.0 558,176 - -0.8 558,176 - -1.3 558,197 + -1.3 558,197 + +0.3 558,198 - +0.3 558,198 - +0.3 558,198 - +0.3 558,231 + -0.3 558,232 - -0.7 558,245 + +0.3 558,246 - +0.3 558,246 - -0.7 558,306 - +0.3 558,397 + +0.3 558,397 + -2.5 558,409 + +0.3 558,410 - +0.3 558,423 + -0.7 558,424 - +0.3 558,424 - +0.3 558,458 + -0.7 558,458 + +0.3 558,458 + +0.3 558,459 - +0.3 558,459 - +0.3 558,459 - -0.3 558,461 + -1.3 558,461 + +0.3 558,461 + -0.7 558,462 - -0.7 558,462 - +0.3 558,462 - +0.3 558,462 - -0.7 558,462 - +0.3 558,481 + -0.7 558,482 - +0.3 558,482 - -1.7 558,482 - -1.0 558,482 - +0.3 558,482 - +0.3 558,482 - -0.7 558,482 - +0.3 558,482 - +0.3 558,482 - +0.3 558,482 - -0.3 558,482 - -0.4 558,578 + Pf6N2E2_491 0.27 -1.4 558,578 + Pf6N2E2_491 0.27 -2.3 558,579 - Pf6N2E2_491 0.27 -0.7 558,579 - Pf6N2E2_491 0.27 +0.3 558,579 - Pf6N2E2_491 0.27 -3.0 558,581 + Pf6N2E2_491 0.28 -0.7 558,581 + Pf6N2E2_491 0.28 -1.3 558,582 - Pf6N2E2_491 0.28 -2.5 558,582 - Pf6N2E2_491 0.28 +0.3 558,582 - Pf6N2E2_491 0.28 -0.6 558,796 - Pf6N2E2_491 0.89 +0.3 558,870 - +0.3 558,870 - +0.3 558,900 - -1.7 558,998 + +0.3 558,998 + -0.7 558,998 + +0.3 558,999 - +0.3 558,999 - +0.3 558,999 - +0.3 558,999 - -0.4 558,999 - -0.7 559,018 + +1.9 559,018 + -0.7 559,019 - -1.3 559,141 + -1.3 559,142 - +0.3 559,256 + Pf6N2E2_492 0.24 -1.3 559,256 + Pf6N2E2_492 0.24 -1.7 559,257 - Pf6N2E2_492 0.24 +0.3 559,257 - Pf6N2E2_492 0.24 +0.3 559,259 + Pf6N2E2_492 0.24 +0.3 559,259 + Pf6N2E2_492 0.24 +0.3 559,260 - Pf6N2E2_492 0.24 -0.7 559,260 - Pf6N2E2_492 0.24 -0.1 559,260 - Pf6N2E2_492 0.24 -0.7 559,284 - Pf6N2E2_492 0.28 +0.3 559,284 - Pf6N2E2_492 0.28 -2.0 559,284 - Pf6N2E2_492 0.28 +0.3 559,284 - Pf6N2E2_492 0.28 -1.3 559,284 - Pf6N2E2_492 0.28 -0.7 559,750 + +0.3 559,751 - +0.3 559,751 - +0.3 559,758 - +0.3 560,132 + Pf6N2E2_493 0.33 -1.5 560,452 + Pf6N2E2_493 0.64 +0.3 560,452 + Pf6N2E2_493 0.64 +0.3 560,701 - Pf6N2E2_493 0.87 +0.3 560,701 - Pf6N2E2_493 0.87 +0.3 560,701 - Pf6N2E2_493 0.87 -0.8 560,701 - Pf6N2E2_493 0.87 +1.3 560,729 - -0.8 560,729 - +0.9 560,729 - +0.3
Or see this region's nucleotide sequence