Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4687

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
5,420,562	+		Pf6N2E2_4686	0.22	-0.5
5,420,599	-		Pf6N2E2_4686	0.26	-1.1
5,420,781	+		Pf6N2E2_4686	0.42	-0.5
5,420,915	-		Pf6N2E2_4686	0.54	-0.2
5,421,058	+		Pf6N2E2_4686	0.67	+0.5
5,421,058	+		Pf6N2E2_4686	0.67	+0.5
5,421,058	+		Pf6N2E2_4686	0.67	+0.5
5,421,058	+		Pf6N2E2_4686	0.67	+0.5
5,421,059	-		Pf6N2E2_4686	0.67	+0.3
5,421,104	-		Pf6N2E2_4686	0.72	-1.1
5,421,104	-		Pf6N2E2_4686	0.72	-0.5
5,421,127	+		Pf6N2E2_4686	0.74	+0.0
5,421,127	+		Pf6N2E2_4686	0.74	-0.5
5,421,128	-		Pf6N2E2_4686	0.74	-1.1
5,421,130	+		Pf6N2E2_4686	0.74	+0.5
5,421,130	+		Pf6N2E2_4686	0.74	+0.5
5,421,130	+		Pf6N2E2_4686	0.74	+0.5
5,421,130	+		Pf6N2E2_4686	0.74	-0.5
5,421,130	+		Pf6N2E2_4686	0.74	-1.1
5,421,130	+		Pf6N2E2_4686	0.74	-0.5
5,421,131	-		Pf6N2E2_4686	0.74	-0.5
5,421,131	-		Pf6N2E2_4686	0.74	-0.9
5,421,207	-		Pf6N2E2_4686	0.81	-0.1
5,421,254	-		Pf6N2E2_4686	0.85	-0.8
5,421,385	-				-2.5
5,421,415	+				+2.5
5,421,416	-				-1.1
5,421,479	+				+0.5
5,421,480	-				-0.5
5,421,488	+				-1.1
5,421,489	-				+0.5
5,421,489	-				-1.1
5,421,489	-				-0.5
5,421,489	-				+0.5
5,421,613	-		Pf6N2E2_4687	0.19	+0.5
5,421,613	-		Pf6N2E2_4687	0.19	+0.5
5,421,613	-		Pf6N2E2_4687	0.19	-1.1
5,421,613	-		Pf6N2E2_4687	0.19	+0.5
5,421,613	-		Pf6N2E2_4687	0.19	-0.5
5,421,642	+		Pf6N2E2_4687	0.30	+0.5
5,421,643	-		Pf6N2E2_4687	0.31	-0.5
5,421,659	+		Pf6N2E2_4687	0.37	+0.5
5,421,659	+		Pf6N2E2_4687	0.37	-1.5
5,421,659	+		Pf6N2E2_4687	0.37	-0.5
5,421,659	+		Pf6N2E2_4687	0.37	-0.2
5,421,659	+		Pf6N2E2_4687	0.37	+0.5
5,421,660	-		Pf6N2E2_4687	0.37	+0.5
5,421,660	-		Pf6N2E2_4687	0.37	-1.6
5,421,660	-		Pf6N2E2_4687	0.37	-0.5
5,421,660	-		Pf6N2E2_4687	0.37	-2.2
5,421,660	-		Pf6N2E2_4687	0.37	-0.8
5,421,660	-		Pf6N2E2_4687	0.37	-1.1
5,421,660	-		Pf6N2E2_4687	0.37	-1.1
5,421,757	+		Pf6N2E2_4687	0.74	-1.5
5,421,818	+				-0.5
5,421,818	+				+0.5
5,421,819	-				-0.5
5,421,922	+				+0.5
5,421,922	+				+0.5
5,421,922	+				+0.3
5,421,923	-				-1.1
5,421,923	-				-0.2
5,422,175	+				-0.4
5,422,175	+				-1.8
5,422,175	+				-0.7
5,422,175	+				+0.5
5,422,175	+				-0.5
5,422,175	+				-0.5
5,422,175	+				+1.1
5,422,175	+				+2.5
5,422,175	+				-2.5
5,422,175	+				-0.5
5,422,175	+				-0.5
5,422,176	-				-0.3
5,422,176	-				-0.5
5,422,176	-				-0.8
5,422,176	-				-0.5
5,422,176	-				-0.5
5,422,176	-				+0.5
5,422,176	-				+0.5
5,422,176	-				-0.1
5,422,176	-				-0.5
5,422,176	-				+0.5
5,422,176	-				+0.5
5,422,176	-				-1.1
5,422,176	-				-1.7
5,422,283	-		Pf6N2E2_4688	0.13	-0.5
5,422,627	+		Pf6N2E2_4688	0.43	-0.5
5,422,627	+		Pf6N2E2_4688	0.43	+0.2
5,422,677	-		Pf6N2E2_4688	0.47	+0.5