Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4292

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
5,002,856	+		Pf6N2E2_4291	0.40	-0.5
5,002,856	+		Pf6N2E2_4291	0.40	-0.5
5,002,856	+		Pf6N2E2_4291	0.40	-0.5
5,002,856	+		Pf6N2E2_4291	0.40	-0.5
5,002,856	+		Pf6N2E2_4291	0.40	-1.5
5,002,890	-		Pf6N2E2_4291	0.43	-0.1
5,002,890	-		Pf6N2E2_4291	0.43	-0.5
5,002,967	+		Pf6N2E2_4291	0.51	+0.1
5,002,968	-		Pf6N2E2_4291	0.51	-1.1
5,002,968	-		Pf6N2E2_4291	0.51	-0.8
5,002,968	-		Pf6N2E2_4291	0.51	+0.5
5,002,974	-		Pf6N2E2_4291	0.51	+0.5
5,003,091	-		Pf6N2E2_4291	0.63	+0.5
5,003,091	-		Pf6N2E2_4291	0.63	-0.5
5,003,141	+		Pf6N2E2_4291	0.68	-1.1
5,003,141	+		Pf6N2E2_4291	0.68	-4.3
5,003,141	+		Pf6N2E2_4291	0.68	-1.1
5,003,141	+		Pf6N2E2_4291	0.68	+0.5
5,003,142	-		Pf6N2E2_4291	0.68	-0.6
5,003,142	-		Pf6N2E2_4291	0.68	-0.6
5,003,142	-		Pf6N2E2_4291	0.68	-0.9
5,003,142	-		Pf6N2E2_4291	0.68	+0.5
5,003,142	-		Pf6N2E2_4291	0.68	-0.5
5,003,142	-		Pf6N2E2_4291	0.68	+0.5
5,003,142	-		Pf6N2E2_4291	0.68	-1.3
5,003,234	+		Pf6N2E2_4291	0.77	-1.1
5,003,235	-		Pf6N2E2_4291	0.77	-0.5
5,003,235	-		Pf6N2E2_4291	0.77	-1.5
5,003,463	-				+0.5
5,003,463	-				-0.9
5,003,589	+				-0.3
5,003,589	+				+0.5
5,003,589	+				-1.0
5,003,743	-				+1.5
5,003,760	+				-0.9
5,003,799	-				+0.5
5,003,802	+				+0.5
5,003,802	+				-1.1
5,003,802	+				-1.1
5,003,802	+				-0.2
5,003,802	+				+0.5
5,003,803	-				+0.5
5,003,803	-				+0.5
5,003,911	-		Pf6N2E2_4292	0.10	-1.1
5,003,911	-		Pf6N2E2_4292	0.10	-0.5
5,004,034	-		Pf6N2E2_4292	0.32	-0.9
5,004,034	-		Pf6N2E2_4292	0.32	+0.5
5,004,034	-		Pf6N2E2_4292	0.32	-0.5
5,004,034	-		Pf6N2E2_4292	0.32	+0.5
5,004,034	-		Pf6N2E2_4292	0.32	+0.5
5,004,034	-		Pf6N2E2_4292	0.32	+0.5
5,004,045	-		Pf6N2E2_4292	0.34	-0.8
5,004,045	-		Pf6N2E2_4292	0.34	-1.1
5,004,045	-		Pf6N2E2_4292	0.34	+0.1
5,004,045	-		Pf6N2E2_4292	0.34	-1.1
5,004,045	-		Pf6N2E2_4292	0.34	+0.5
5,004,151	-		Pf6N2E2_4292	0.53	-0.5
5,004,174	+		Pf6N2E2_4292	0.57	+0.5
5,004,175	-		Pf6N2E2_4292	0.57	-0.5
5,004,175	-		Pf6N2E2_4292	0.57	-1.1
5,004,175	-		Pf6N2E2_4292	0.57	-0.5
5,004,256	-		Pf6N2E2_4292	0.71	+0.5
5,004,256	-		Pf6N2E2_4292	0.71	-0.8
5,004,256	-		Pf6N2E2_4292	0.71	-1.4
5,004,267	+		Pf6N2E2_4292	0.73	+0.5
5,004,268	-		Pf6N2E2_4292	0.73	+0.5
5,004,268	-		Pf6N2E2_4292	0.73	-0.5
5,004,268	-		Pf6N2E2_4292	0.73	-1.1
5,004,268	-		Pf6N2E2_4292	0.73	-0.5
5,004,268	-		Pf6N2E2_4292	0.73	-0.8
5,004,268	-		Pf6N2E2_4292	0.73	-1.1
5,004,268	-		Pf6N2E2_4292	0.73	-0.5
5,004,268	-		Pf6N2E2_4292	0.73	-1.1
5,004,268	-		Pf6N2E2_4292	0.73	-1.1
5,004,268	-		Pf6N2E2_4292	0.73	+0.5
5,004,268	-		Pf6N2E2_4292	0.73	-0.5
5,004,268	-		Pf6N2E2_4292	0.73	-0.8
5,004,274	-		Pf6N2E2_4292	0.74	-1.1
5,004,274	-		Pf6N2E2_4292	0.74	-1.2
5,004,329	-		Pf6N2E2_4292	0.84	+0.5
5,004,369	-				-1.1
5,004,369	-				-3.2
5,004,384	+				+0.5
5,004,384	+				+0.5
5,004,697	+				+0.5
5,004,697	+				-1.5
5,004,697	+				-1.1
5,004,697	+				-0.5
5,004,697	+				+0.5
5,004,697	+				-1.5
5,004,697	+				+0.5
5,004,697	+				-0.5
5,004,697	+				-1.5
5,004,697	+				-1.1
5,004,697	+				-1.1
5,004,697	+				+0.5
5,004,697	+				+0.5
5,004,697	+				-0.5
5,004,698	-				+0.5
5,004,698	-				-0.5
5,004,698	-				+0.5
5,004,698	-				-0.2
5,004,698	-				+0.5
5,004,698	-				-0.5
5,004,698	-				+0.3
5,004,698	-				-0.5
5,004,698	-				-1.1
5,004,698	-				+0.5
5,004,698	-				-1.3
5,004,718	+				-1.1
5,004,719	-				+0.5
5,004,796	+				-1.1
5,004,796	+				-1.1
5,004,798	+				+0.5
5,004,798	+				+0.5
5,004,816	+				+0.5
5,004,889	+				-0.5
5,004,889	+				+0.5
5,004,889	+				+0.5
5,004,890	-				-1.1
5,004,890	-				-0.6
5,005,102	-		Pf6N2E2_4293	0.15	+0.5
5,005,161	+		Pf6N2E2_4293	0.18	+0.5
5,005,242	+		Pf6N2E2_4293	0.22	+0.5
5,005,242	+		Pf6N2E2_4293	0.22	+0.5
5,005,242	+		Pf6N2E2_4293	0.22	+0.5
5,005,242	+		Pf6N2E2_4293	0.22	-1.1
5,005,242	+		Pf6N2E2_4293	0.22	-0.3
5,005,243	-		Pf6N2E2_4293	0.22	-1.5
5,005,243	-		Pf6N2E2_4293	0.22	+0.5
5,005,243	-		Pf6N2E2_4293	0.22	-1.5
5,005,289	+		Pf6N2E2_4293	0.24	-1.1
5,005,290	-		Pf6N2E2_4293	0.24	-0.5
5,005,290	-		Pf6N2E2_4293	0.24	-0.5
5,005,318	+		Pf6N2E2_4293	0.25	+0.5
5,005,318	+		Pf6N2E2_4293	0.25	-0.5
5,005,319	-		Pf6N2E2_4293	0.25	-1.9
5,005,319	-		Pf6N2E2_4293	0.25	+0.5
5,005,319	-		Pf6N2E2_4293	0.25	-0.5
5,005,319	-		Pf6N2E2_4293	0.25	-0.5