Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4068

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
4,741,942	+		Pf6N2E2_4067	0.35	-0.8
4,741,960	+		Pf6N2E2_4067	0.36	-0.5
4,741,961	-		Pf6N2E2_4067	0.36	-1.3
4,741,961	-		Pf6N2E2_4067	0.36	-0.6
4,742,004	-		Pf6N2E2_4067	0.40	-1.1
4,742,004	-		Pf6N2E2_4067	0.40	-0.5
4,742,007	+		Pf6N2E2_4067	0.40	-1.2
4,742,007	+		Pf6N2E2_4067	0.40	-1.7
4,742,008	-		Pf6N2E2_4067	0.40	-1.1
4,742,008	-		Pf6N2E2_4067	0.40	+0.3
4,742,008	-		Pf6N2E2_4067	0.40	+0.5
4,742,008	-		Pf6N2E2_4067	0.40	-0.5
4,742,008	-		Pf6N2E2_4067	0.40	-0.5
4,742,008	-		Pf6N2E2_4067	0.40	+0.5
4,742,017	+		Pf6N2E2_4067	0.41	-0.9
4,742,017	+		Pf6N2E2_4067	0.41	-0.5
4,742,017	+		Pf6N2E2_4067	0.41	-1.3
4,742,018	-		Pf6N2E2_4067	0.41	-0.7
4,742,018	-		Pf6N2E2_4067	0.41	+0.5
4,742,018	-		Pf6N2E2_4067	0.41	-1.1
4,742,018	-		Pf6N2E2_4067	0.41	-1.1
4,742,018	-		Pf6N2E2_4067	0.41	-0.5
4,742,029	+		Pf6N2E2_4067	0.41	-0.3
4,742,159	-		Pf6N2E2_4067	0.51	-1.1
4,742,742	+				-0.8
4,742,742	+				+0.5
4,742,742	+				+0.5
4,742,743	-				-0.6
4,742,743	-				-1.1
4,742,743	-				+0.5
4,742,743	-				-1.1
4,742,836	+				+0.5
4,742,885	+				-1.1
4,742,886	-				-2.1
4,742,886	-				-0.5
4,742,886	-				-0.5
4,742,886	-				+0.5
4,742,886	-				-1.5
4,742,891	+				+1.5
4,742,892	-				-1.5
4,742,894	-				-1.5
4,742,894	-				-1.5
4,742,894	-				+0.5
4,743,092	+		Pf6N2E2_4068	0.13	-0.5
4,743,110	+		Pf6N2E2_4068	0.14	+0.5
4,743,126	+		Pf6N2E2_4068	0.16	+0.5
4,743,126	+		Pf6N2E2_4068	0.16	-2.4
4,743,126	+		Pf6N2E2_4068	0.16	+0.5
4,743,127	-		Pf6N2E2_4068	0.16	-2.7
4,743,127	-		Pf6N2E2_4068	0.16	-2.6
4,743,149	+		Pf6N2E2_4068	0.17	-1.8
4,743,235	+		Pf6N2E2_4068	0.24	+0.5
4,743,235	+		Pf6N2E2_4068	0.24	-0.5
4,743,236	-		Pf6N2E2_4068	0.24	-2.8
4,743,236	-		Pf6N2E2_4068	0.24	-1.1
4,743,295	-		Pf6N2E2_4068	0.28	+0.5
4,743,384	+		Pf6N2E2_4068	0.35	-0.8
4,743,384	+		Pf6N2E2_4068	0.35	-1.8
4,743,385	-		Pf6N2E2_4068	0.35	-1.5
4,743,385	-		Pf6N2E2_4068	0.35	-2.1
4,743,385	-		Pf6N2E2_4068	0.35	+0.5
4,743,393	+		Pf6N2E2_4068	0.36	+0.5
4,743,393	+		Pf6N2E2_4068	0.36	+0.5
4,743,393	+		Pf6N2E2_4068	0.36	-1.1
4,743,394	-		Pf6N2E2_4068	0.36	-0.5
4,743,394	-		Pf6N2E2_4068	0.36	+0.5
4,743,394	-		Pf6N2E2_4068	0.36	-1.1
4,743,417	+		Pf6N2E2_4068	0.37	+0.5
4,743,418	-		Pf6N2E2_4068	0.37	-3.7
4,743,418	-		Pf6N2E2_4068	0.37	-0.5
4,743,495	+		Pf6N2E2_4068	0.43	-0.5
4,743,495	+		Pf6N2E2_4068	0.43	-0.5
4,743,495	+		Pf6N2E2_4068	0.43	-2.4
4,743,496	-		Pf6N2E2_4068	0.43	+0.5
4,743,523	+		Pf6N2E2_4068	0.45	-2.4
4,743,523	+		Pf6N2E2_4068	0.45	-0.5
4,743,523	+		Pf6N2E2_4068	0.45	-1.5
4,743,523	+		Pf6N2E2_4068	0.45	+0.5
4,743,523	+		Pf6N2E2_4068	0.45	-1.8
4,743,524	-		Pf6N2E2_4068	0.45	+0.5
4,743,524	-		Pf6N2E2_4068	0.45	-1.1
4,743,714	+		Pf6N2E2_4068	0.60	-2.1
4,743,714	+		Pf6N2E2_4068	0.60	+0.5
4,743,715	-		Pf6N2E2_4068	0.60	-1.5
4,743,715	-		Pf6N2E2_4068	0.60	-1.1
4,743,715	-		Pf6N2E2_4068	0.60	-2.4
4,743,715	-		Pf6N2E2_4068	0.60	-1.1
4,743,715	-		Pf6N2E2_4068	0.60	-0.5
4,743,715	-		Pf6N2E2_4068	0.60	-1.1
4,744,055	+		Pf6N2E2_4068	0.85	-1.1
4,744,084	+		Pf6N2E2_4068	0.87	+0.5
4,744,085	-		Pf6N2E2_4068	0.87	+0.5
4,744,134	+				+0.5
4,744,134	+				-1.8
4,744,135	-				+0.5
4,744,135	-				-1.1
4,744,135	-				-0.5
4,744,220	+				-1.5
4,744,220	+				-1.1
4,744,220	+				+0.5
4,744,220	+				-0.5
4,744,220	+				+0.5
4,744,220	+				-0.5
4,744,220	+				+0.5
4,744,220	+				-2.1
4,744,220	+				+0.5
4,744,221	-				-1.5
4,744,221	-				-0.5
4,744,221	-				-0.5
4,744,280	+				-1.4
4,744,280	+				-1.5
4,744,280	+				-1.1
4,744,407	-				+0.5
4,744,461	-				-0.5
4,744,588	+		Pf6N2E2_4069	0.20	-1.8
4,744,619	+		Pf6N2E2_4069	0.24	-0.5
4,744,620	-		Pf6N2E2_4069	0.24	-0.6
4,744,800	-		Pf6N2E2_4069	0.44	-0.5
4,744,800	-		Pf6N2E2_4069	0.44	-0.4
4,744,862	+		Pf6N2E2_4069	0.51	+0.5
4,744,863	-		Pf6N2E2_4069	0.51	-1.1
4,744,899	-		Pf6N2E2_4069	0.55	-0.6
4,744,916	+		Pf6N2E2_4069	0.57	-0.3
4,744,917	-		Pf6N2E2_4069	0.57	+0.5
4,744,917	-		Pf6N2E2_4069	0.57	-1.0
4,744,917	-		Pf6N2E2_4069	0.57	+0.5
4,745,063	+		Pf6N2E2_4069	0.73	-0.5
4,745,063	+		Pf6N2E2_4069	0.73	+0.5
4,745,064	-		Pf6N2E2_4069	0.73	-0.5
4,745,122	+		Pf6N2E2_4069	0.80	-1.1
4,745,122	+		Pf6N2E2_4069	0.80	+0.5
4,745,122	+		Pf6N2E2_4069	0.80	+0.5
4,745,122	+		Pf6N2E2_4069	0.80	-0.1
4,745,123	-		Pf6N2E2_4069	0.80	-1.1
4,745,123	-		Pf6N2E2_4069	0.80	-0.8
4,745,123	-		Pf6N2E2_4069	0.80	-0.2
4,745,123	-		Pf6N2E2_4069	0.80	-0.5
4,745,198	+		Pf6N2E2_4069	0.88	-1.1
4,745,198	+		Pf6N2E2_4069	0.88	-0.5
4,745,198	+		Pf6N2E2_4069	0.88	-2.5
4,745,198	+		Pf6N2E2_4069	0.88	-0.5
4,745,199	-		Pf6N2E2_4069	0.89	+0.5
4,745,199	-		Pf6N2E2_4069	0.89	-0.5
4,745,199	-		Pf6N2E2_4069	0.89	-0.2
4,745,199	-		Pf6N2E2_4069	0.89	-1.1
4,745,199	-		Pf6N2E2_4069	0.89	-1.8
4,745,231	+				+0.5
4,745,231	+				-0.5
4,745,231	+				+0.5
4,745,231	+				-1.1
4,745,231	+				-1.5
4,745,231	+				+0.5
4,745,232	-				-1.1
4,745,232	-				-1.5