Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_825 and Pf6N2E2_826 are separated by 284 nucleotides Pf6N2E2_826 and Pf6N2E2_827 are separated by 541 nucleotides
Pf6N2E2_825 - Multidrug efflux membrane fusion protein MexE, at 963,173 to 964,426
_825
Pf6N2E2_826 - ABC-type amino acid transport, signal transduction systems, periplasmic component/domain, at 964,711 to 965,301
_826
Pf6N2E2_827 - probable dioxygenase, at 965,843 to 966,268
_827
Position (kb) 964
965
966 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 963.711 kb on + strand, within Pf6N2E2_825 at 963.711 kb on + strand, within Pf6N2E2_825 at 963.712 kb on - strand, within Pf6N2E2_825 at 963.759 kb on + strand, within Pf6N2E2_825 at 963.759 kb on + strand, within Pf6N2E2_825 at 963.760 kb on - strand, within Pf6N2E2_825 at 963.792 kb on + strand, within Pf6N2E2_825 at 963.798 kb on + strand, within Pf6N2E2_825 at 963.799 kb on - strand, within Pf6N2E2_825 at 964.118 kb on + strand, within Pf6N2E2_825 at 964.119 kb on - strand, within Pf6N2E2_825 at 964.299 kb on - strand, within Pf6N2E2_825 at 964.299 kb on - strand, within Pf6N2E2_825 at 964.299 kb on - strand, within Pf6N2E2_825 at 964.430 kb on + strand at 964.507 kb on + strand at 964.508 kb on - strand at 964.511 kb on + strand at 964.511 kb on + strand at 964.511 kb on + strand at 964.511 kb on + strand at 964.526 kb on + strand at 964.526 kb on + strand at 964.526 kb on + strand at 964.526 kb on + strand at 964.526 kb on + strand at 964.526 kb on + strand at 964.528 kb on + strand at 964.528 kb on + strand at 964.528 kb on + strand at 964.528 kb on + strand at 964.528 kb on + strand at 964.528 kb on + strand at 964.528 kb on + strand at 964.528 kb on + strand at 964.528 kb on + strand at 964.528 kb on + strand at 964.528 kb on + strand at 964.528 kb on + strand at 964.528 kb on + strand at 964.528 kb on + strand at 964.529 kb on - strand at 964.548 kb on + strand at 964.562 kb on + strand at 964.562 kb on + strand at 964.562 kb on + strand at 964.563 kb on - strand at 964.713 kb on - strand at 964.724 kb on + strand at 964.737 kb on + strand at 964.737 kb on + strand at 964.738 kb on - strand at 964.829 kb on + strand, within Pf6N2E2_826 at 964.829 kb on + strand, within Pf6N2E2_826 at 964.982 kb on + strand, within Pf6N2E2_826 at 964.982 kb on + strand, within Pf6N2E2_826 at 964.983 kb on - strand, within Pf6N2E2_826 at 964.983 kb on - strand, within Pf6N2E2_826 at 964.983 kb on - strand, within Pf6N2E2_826 at 965.020 kb on - strand, within Pf6N2E2_826 at 965.061 kb on - strand, within Pf6N2E2_826 at 965.242 kb on + strand, within Pf6N2E2_826 at 965.242 kb on + strand, within Pf6N2E2_826 at 965.242 kb on + strand, within Pf6N2E2_826 at 965.242 kb on + strand, within Pf6N2E2_826 at 965.242 kb on + strand, within Pf6N2E2_826 at 965.243 kb on - strand at 965.243 kb on - strand at 965.243 kb on - strand at 965.243 kb on - strand at 965.243 kb on - strand at 965.255 kb on - strand at 965.255 kb on - strand at 965.463 kb on + strand at 965.542 kb on + strand at 965.542 kb on + strand at 965.543 kb on - strand at 965.543 kb on - strand at 965.543 kb on - strand at 965.543 kb on - strand at 965.660 kb on + strand at 965.660 kb on + strand at 965.660 kb on + strand at 965.660 kb on + strand at 965.661 kb on - strand at 965.661 kb on - strand at 965.662 kb on + strand at 965.662 kb on + strand at 965.663 kb on - strand at 965.663 kb on - strand at 965.663 kb on - strand at 965.663 kb on - strand at 965.701 kb on + strand at 965.701 kb on + strand at 965.701 kb on + strand at 965.702 kb on - strand at 965.830 kb on - strand at 965.879 kb on + strand at 965.907 kb on - strand, within Pf6N2E2_827 at 965.907 kb on - strand, within Pf6N2E2_827 at 965.970 kb on - strand, within Pf6N2E2_827 at 966.152 kb on + strand, within Pf6N2E2_827
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 963,711 + Pf6N2E2_825 0.43 +0.2 963,711 + Pf6N2E2_825 0.43 +0.2 963,712 - Pf6N2E2_825 0.43 +0.2 963,759 + Pf6N2E2_825 0.47 +0.2 963,759 + Pf6N2E2_825 0.47 -0.8 963,760 - Pf6N2E2_825 0.47 -0.8 963,792 + Pf6N2E2_825 0.49 -0.2 963,798 + Pf6N2E2_825 0.50 -1.4 963,799 - Pf6N2E2_825 0.50 +0.2 964,118 + Pf6N2E2_825 0.75 -1.4 964,119 - Pf6N2E2_825 0.75 +1.2 964,299 - Pf6N2E2_825 0.90 +0.2 964,299 - Pf6N2E2_825 0.90 +0.2 964,299 - Pf6N2E2_825 0.90 +0.2 964,430 + +0.2 964,507 + +0.2 964,508 - +0.2 964,511 + +0.2 964,511 + +0.2 964,511 + +0.6 964,511 + -0.8 964,526 + +0.2 964,526 + -0.5 964,526 + +0.2 964,526 + -0.4 964,526 + -0.4 964,526 + -0.8 964,528 + +0.2 964,528 + +0.2 964,528 + +0.2 964,528 + +0.2 964,528 + +0.2 964,528 + +0.2 964,528 + -1.4 964,528 + +0.2 964,528 + +0.2 964,528 + -1.0 964,528 + -1.4 964,528 + +0.2 964,528 + -0.2 964,528 + +0.2 964,529 - +0.2 964,548 + -0.8 964,562 + -0.6 964,562 + +0.2 964,562 + -0.8 964,563 - +0.2 964,713 - +0.2 964,724 + +0.2 964,737 + -0.1 964,737 + +0.2 964,738 - -0.8 964,829 + Pf6N2E2_826 0.20 +0.2 964,829 + Pf6N2E2_826 0.20 -1.4 964,982 + Pf6N2E2_826 0.46 +0.2 964,982 + Pf6N2E2_826 0.46 +0.2 964,983 - Pf6N2E2_826 0.46 +0.2 964,983 - Pf6N2E2_826 0.46 -1.4 964,983 - Pf6N2E2_826 0.46 +0.2 965,020 - Pf6N2E2_826 0.52 -2.2 965,061 - Pf6N2E2_826 0.59 +0.2 965,242 + Pf6N2E2_826 0.90 -0.8 965,242 + Pf6N2E2_826 0.90 +0.2 965,242 + Pf6N2E2_826 0.90 -1.2 965,242 + Pf6N2E2_826 0.90 -1.8 965,242 + Pf6N2E2_826 0.90 -0.8 965,243 - +0.2 965,243 - +0.2 965,243 - +0.2 965,243 - +0.2 965,243 - -1.5 965,255 - -0.8 965,255 - -0.8 965,463 + +0.2 965,542 + +0.2 965,542 + +0.2 965,543 - -0.7 965,543 - -0.8 965,543 - -0.8 965,543 - -0.8 965,660 + +0.2 965,660 + +0.2 965,660 + -0.8 965,660 + +0.2 965,661 - -0.2 965,661 - +0.2 965,662 + -1.4 965,662 + -1.4 965,663 - +0.2 965,663 - -5.1 965,663 - +0.2 965,663 - -0.8 965,701 + -1.4 965,701 + -1.8 965,701 + +0.2 965,702 - +0.2 965,830 - -0.6 965,879 + +0.2 965,907 - Pf6N2E2_827 0.15 +0.2 965,907 - Pf6N2E2_827 0.15 +0.2 965,970 - Pf6N2E2_827 0.30 +0.2 966,152 + Pf6N2E2_827 0.73 -1.3
Or see this region's nucleotide sequence