Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_676 and Pf6N2E2_677 are separated by 233 nucleotides Pf6N2E2_677 and Pf6N2E2_678 are separated by 120 nucleotides
Pf6N2E2_676 - ABC transporter, substrate binding protein, at 781,117 to 781,935
_676
Pf6N2E2_677 - Transcriptional regulator, AraC family, at 782,169 to 782,918
_677
Pf6N2E2_678 - Putative oxidoreductase in 4-hydroxyproline catabolic gene cluster, at 783,039 to 784,295
_678
Position (kb) 782
783 Strain fitness (log2 ratio) -2
-1
0
1 at 781.235 kb on + strand, within Pf6N2E2_676 at 781.235 kb on + strand, within Pf6N2E2_676 at 781.235 kb on + strand, within Pf6N2E2_676 at 781.236 kb on - strand, within Pf6N2E2_676 at 781.280 kb on + strand, within Pf6N2E2_676 at 781.280 kb on + strand, within Pf6N2E2_676 at 781.280 kb on + strand, within Pf6N2E2_676 at 781.280 kb on + strand, within Pf6N2E2_676 at 781.280 kb on + strand, within Pf6N2E2_676 at 781.280 kb on + strand, within Pf6N2E2_676 at 781.280 kb on + strand, within Pf6N2E2_676 at 781.280 kb on + strand, within Pf6N2E2_676 at 781.281 kb on - strand, within Pf6N2E2_676 at 781.281 kb on - strand, within Pf6N2E2_676 at 781.281 kb on - strand, within Pf6N2E2_676 at 781.281 kb on - strand, within Pf6N2E2_676 at 781.281 kb on - strand, within Pf6N2E2_676 at 781.292 kb on + strand, within Pf6N2E2_676 at 781.293 kb on - strand, within Pf6N2E2_676 at 781.325 kb on + strand, within Pf6N2E2_676 at 781.325 kb on + strand, within Pf6N2E2_676 at 781.326 kb on - strand, within Pf6N2E2_676 at 781.326 kb on - strand, within Pf6N2E2_676 at 781.487 kb on + strand, within Pf6N2E2_676 at 781.500 kb on + strand, within Pf6N2E2_676 at 781.532 kb on + strand, within Pf6N2E2_676 at 781.533 kb on - strand, within Pf6N2E2_676 at 781.533 kb on - strand, within Pf6N2E2_676 at 781.533 kb on - strand, within Pf6N2E2_676 at 781.717 kb on + strand, within Pf6N2E2_676 at 781.718 kb on - strand, within Pf6N2E2_676 at 781.748 kb on + strand, within Pf6N2E2_676 at 781.748 kb on + strand, within Pf6N2E2_676 at 781.749 kb on - strand, within Pf6N2E2_676 at 781.749 kb on - strand, within Pf6N2E2_676 at 781.773 kb on + strand, within Pf6N2E2_676 at 781.935 kb on + strand at 781.936 kb on - strand at 781.954 kb on + strand at 781.955 kb on - strand at 782.060 kb on + strand at 782.060 kb on + strand at 782.121 kb on - strand at 782.252 kb on - strand, within Pf6N2E2_677 at 782.456 kb on + strand, within Pf6N2E2_677 at 782.457 kb on - strand, within Pf6N2E2_677 at 782.592 kb on + strand, within Pf6N2E2_677 at 782.592 kb on + strand, within Pf6N2E2_677 at 782.592 kb on + strand, within Pf6N2E2_677 at 782.593 kb on - strand, within Pf6N2E2_677 at 782.593 kb on - strand, within Pf6N2E2_677 at 782.611 kb on + strand, within Pf6N2E2_677 at 782.611 kb on + strand, within Pf6N2E2_677 at 782.914 kb on + strand at 782.914 kb on + strand at 782.914 kb on + strand at 782.914 kb on + strand at 782.914 kb on + strand at 782.914 kb on + strand at 782.915 kb on - strand at 782.915 kb on - strand at 782.915 kb on - strand at 782.915 kb on - strand at 782.915 kb on - strand at 782.915 kb on - strand at 783.240 kb on + strand, within Pf6N2E2_678 at 783.241 kb on - strand, within Pf6N2E2_678 at 783.466 kb on + strand, within Pf6N2E2_678 at 783.466 kb on + strand, within Pf6N2E2_678 at 783.546 kb on + strand, within Pf6N2E2_678 at 783.546 kb on + strand, within Pf6N2E2_678 at 783.622 kb on + strand, within Pf6N2E2_678 at 783.623 kb on - strand, within Pf6N2E2_678
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 781,235 + Pf6N2E2_676 0.14 +0.2 781,235 + Pf6N2E2_676 0.14 -0.2 781,235 + Pf6N2E2_676 0.14 -0.4 781,236 - Pf6N2E2_676 0.15 -0.2 781,280 + Pf6N2E2_676 0.20 +0.2 781,280 + Pf6N2E2_676 0.20 -0.8 781,280 + Pf6N2E2_676 0.20 -0.7 781,280 + Pf6N2E2_676 0.20 +0.2 781,280 + Pf6N2E2_676 0.20 +0.2 781,280 + Pf6N2E2_676 0.20 +0.2 781,280 + Pf6N2E2_676 0.20 +0.7 781,280 + Pf6N2E2_676 0.20 +0.2 781,281 - Pf6N2E2_676 0.20 +0.2 781,281 - Pf6N2E2_676 0.20 +0.2 781,281 - Pf6N2E2_676 0.20 -0.8 781,281 - Pf6N2E2_676 0.20 -0.8 781,281 - Pf6N2E2_676 0.20 -0.8 781,292 + Pf6N2E2_676 0.21 -0.2 781,293 - Pf6N2E2_676 0.21 -1.4 781,325 + Pf6N2E2_676 0.25 +0.2 781,325 + Pf6N2E2_676 0.25 -0.8 781,326 - Pf6N2E2_676 0.26 -1.1 781,326 - Pf6N2E2_676 0.26 -0.8 781,487 + Pf6N2E2_676 0.45 +0.2 781,500 + Pf6N2E2_676 0.47 -0.4 781,532 + Pf6N2E2_676 0.51 +0.2 781,533 - Pf6N2E2_676 0.51 +0.4 781,533 - Pf6N2E2_676 0.51 -0.3 781,533 - Pf6N2E2_676 0.51 -0.3 781,717 + Pf6N2E2_676 0.73 -0.8 781,718 - Pf6N2E2_676 0.73 +0.2 781,748 + Pf6N2E2_676 0.77 +0.2 781,748 + Pf6N2E2_676 0.77 -1.4 781,749 - Pf6N2E2_676 0.77 +1.2 781,749 - Pf6N2E2_676 0.77 +0.2 781,773 + Pf6N2E2_676 0.80 +0.2 781,935 + +0.2 781,936 - +0.2 781,954 + +0.2 781,955 - +0.2 782,060 + -0.8 782,060 + -2.7 782,121 - +0.2 782,252 - Pf6N2E2_677 0.11 +0.2 782,456 + Pf6N2E2_677 0.38 +0.2 782,457 - Pf6N2E2_677 0.38 +0.2 782,592 + Pf6N2E2_677 0.56 -0.8 782,592 + Pf6N2E2_677 0.56 -2.0 782,592 + Pf6N2E2_677 0.56 +0.2 782,593 - Pf6N2E2_677 0.57 -0.8 782,593 - Pf6N2E2_677 0.57 -2.4 782,611 + Pf6N2E2_677 0.59 -0.8 782,611 + Pf6N2E2_677 0.59 -0.7 782,914 + +0.4 782,914 + -2.2 782,914 + +0.2 782,914 + +0.2 782,914 + -0.8 782,914 + +0.2 782,915 - +0.2 782,915 - -1.4 782,915 - -1.4 782,915 - +0.2 782,915 - +0.2 782,915 - +0.2 783,240 + Pf6N2E2_678 0.16 +0.2 783,241 - Pf6N2E2_678 0.16 +0.2 783,466 + Pf6N2E2_678 0.34 +0.2 783,466 + Pf6N2E2_678 0.34 -0.6 783,546 + Pf6N2E2_678 0.40 -0.7 783,546 + Pf6N2E2_678 0.40 -0.4 783,622 + Pf6N2E2_678 0.46 +0.2 783,623 - Pf6N2E2_678 0.46 -0.8
Or see this region's nucleotide sequence