Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5061

Experiment: Ying_all64 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5060 and Pf6N2E2_5061 are separated by 319 nucleotidesPf6N2E2_5061 and Pf6N2E2_5062 overlap by 4 nucleotidesPf6N2E2_5062 and Pf6N2E2_5063 are separated by 286 nucleotides Pf6N2E2_5060 - hypothetical protein, at 5,835,164 to 5,836,111 _5060 Pf6N2E2_5061 - Quinate/shikimate 5-dehydrogenase I delta (EC 1.1.1.25), at 5,836,431 to 5,837,288 _5061 Pf6N2E2_5062 - 3-dehydroquinate dehydratase II (EC 4.2.1.10), at 5,837,285 to 5,837,728 _5062 Pf6N2E2_5063 - tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35), at 5,838,015 to 5,839,094 _5063 Position (kb) 5836 5837 5838Strain fitness (log2 ratio) -2 -1 0 1at 5836.307 kb on + strandat 5836.307 kb on + strandat 5836.307 kb on + strandat 5836.307 kb on + strandat 5836.312 kb on + strandat 5836.312 kb on + strandat 5836.312 kb on + strandat 5836.312 kb on + strandat 5836.312 kb on + strandat 5836.312 kb on + strandat 5836.402 kb on + strandat 5836.402 kb on + strandat 5836.402 kb on + strandat 5836.419 kb on + strandat 5836.600 kb on + strand, within Pf6N2E2_5061at 5836.601 kb on - strand, within Pf6N2E2_5061at 5836.601 kb on - strand, within Pf6N2E2_5061at 5837.180 kb on - strand, within Pf6N2E2_5061at 5837.180 kb on - strand, within Pf6N2E2_5061at 5837.180 kb on - strand, within Pf6N2E2_5061at 5837.273 kb on + strandat 5837.273 kb on + strandat 5837.288 kb on + strandat 5837.289 kb on - strandat 5837.444 kb on + strand, within Pf6N2E2_5062at 5837.445 kb on - strand, within Pf6N2E2_5062at 5837.658 kb on + strand, within Pf6N2E2_5062at 5837.658 kb on + strand, within Pf6N2E2_5062at 5837.658 kb on + strand, within Pf6N2E2_5062at 5837.659 kb on - strand, within Pf6N2E2_5062at 5837.659 kb on - strand, within Pf6N2E2_5062at 5837.795 kb on - strandat 5837.802 kb on + strandat 5837.815 kb on + strandat 5837.815 kb on + strandat 5837.816 kb on - strandat 5837.816 kb on - strandat 5837.837 kb on + strandat 5837.837 kb on + strandat 5837.837 kb on + strandat 5837.837 kb on + strandat 5837.837 kb on + strandat 5837.838 kb on - strandat 5837.838 kb on - strandat 5838.016 kb on + strandat 5838.047 kb on + strandat 5838.047 kb on + strandat 5838.048 kb on - strandat 5838.048 kb on - strandat 5838.048 kb on - strandat 5838.048 kb on - strandat 5838.089 kb on + strandat 5838.090 kb on - strandat 5838.154 kb on + strand, within Pf6N2E2_5063at 5838.154 kb on + strand, within Pf6N2E2_5063at 5838.154 kb on + strand, within Pf6N2E2_5063at 5838.154 kb on + strand, within Pf6N2E2_5063at 5838.155 kb on - strand, within Pf6N2E2_5063at 5838.155 kb on - strand, within Pf6N2E2_5063at 5838.155 kb on - strand, within Pf6N2E2_5063at 5838.155 kb on - strand, within Pf6N2E2_5063

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3
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5,836,307 + -1.9
5,836,307 + -1.9
5,836,307 + -1.2
5,836,307 + -0.6
5,836,312 + -0.3
5,836,312 + -0.2
5,836,312 + +0.4
5,836,312 + -0.6
5,836,312 + -1.8
5,836,312 + -0.2
5,836,402 + -1.1
5,836,402 + -0.8
5,836,402 + +0.4
5,836,419 + +0.4
5,836,600 + Pf6N2E2_5061 0.20 +0.4
5,836,601 - Pf6N2E2_5061 0.20 +0.4
5,836,601 - Pf6N2E2_5061 0.20 -0.5
5,837,180 - Pf6N2E2_5061 0.87 +0.4
5,837,180 - Pf6N2E2_5061 0.87 -0.6
5,837,180 - Pf6N2E2_5061 0.87 -0.4
5,837,273 + -0.6
5,837,273 + -0.6
5,837,288 + +0.4
5,837,289 - -0.8
5,837,444 + Pf6N2E2_5062 0.36 -0.7
5,837,445 - Pf6N2E2_5062 0.36 +0.4
5,837,658 + Pf6N2E2_5062 0.84 -0.6
5,837,658 + Pf6N2E2_5062 0.84 -0.6
5,837,658 + Pf6N2E2_5062 0.84 +0.4
5,837,659 - Pf6N2E2_5062 0.84 -0.2
5,837,659 - Pf6N2E2_5062 0.84 -0.7
5,837,795 - +0.4
5,837,802 + -0.9
5,837,815 + +0.4
5,837,815 + +0.4
5,837,816 - +0.4
5,837,816 - +0.4
5,837,837 + -0.9
5,837,837 + -0.6
5,837,837 + -0.8
5,837,837 + +0.4
5,837,837 + -1.3
5,837,838 - +0.4
5,837,838 - -0.6
5,838,016 + -0.6
5,838,047 + +0.4
5,838,047 + +0.4
5,838,048 - +0.4
5,838,048 - +0.4
5,838,048 - +0.4
5,838,048 - +0.4
5,838,089 + +0.4
5,838,090 - +0.4
5,838,154 + Pf6N2E2_5063 0.13 -0.6
5,838,154 + Pf6N2E2_5063 0.13 +0.4
5,838,154 + Pf6N2E2_5063 0.13 -0.6
5,838,154 + Pf6N2E2_5063 0.13 -0.2
5,838,155 - Pf6N2E2_5063 0.13 -0.6
5,838,155 - Pf6N2E2_5063 0.13 -0.5
5,838,155 - Pf6N2E2_5063 0.13 +0.4
5,838,155 - Pf6N2E2_5063 0.13 +0.4

Or see this region's nucleotide sequence