Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4941

Experiment: Ying_all64 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4940 and Pf6N2E2_4941 are separated by 3 nucleotidesPf6N2E2_4941 and Pf6N2E2_4942 are separated by 369 nucleotidesPf6N2E2_4942 and Pf6N2E2_4943 are separated by 22 nucleotides Pf6N2E2_4940 - FIG00954181: hypothetical protein, at 5,696,379 to 5,697,998 _4940 Pf6N2E2_4941 - FIG00638718: hypothetical protein, at 5,698,002 to 5,698,832 _4941 Pf6N2E2_4942 - FIG006163: hypothetical protein, at 5,699,202 to 5,699,783 _4942 Pf6N2E2_4943 - PspA/IM30 family protein, at 5,699,806 to 5,700,504 _4943 Position (kb) 5698 5699Strain fitness (log2 ratio) -2 -1 0 1at 5697.076 kb on - strand, within Pf6N2E2_4940at 5697.324 kb on + strand, within Pf6N2E2_4940at 5697.324 kb on + strand, within Pf6N2E2_4940at 5697.325 kb on - strand, within Pf6N2E2_4940at 5697.325 kb on - strand, within Pf6N2E2_4940at 5697.325 kb on - strand, within Pf6N2E2_4940at 5697.405 kb on + strand, within Pf6N2E2_4940at 5697.406 kb on - strand, within Pf6N2E2_4940at 5697.406 kb on - strand, within Pf6N2E2_4940at 5697.406 kb on - strand, within Pf6N2E2_4940at 5697.406 kb on - strand, within Pf6N2E2_4940at 5697.558 kb on + strand, within Pf6N2E2_4940at 5697.558 kb on + strand, within Pf6N2E2_4940at 5697.559 kb on - strand, within Pf6N2E2_4940at 5697.783 kb on + strand, within Pf6N2E2_4940at 5697.783 kb on + strand, within Pf6N2E2_4940at 5697.783 kb on + strand, within Pf6N2E2_4940at 5697.784 kb on - strand, within Pf6N2E2_4940at 5697.834 kb on + strand, within Pf6N2E2_4940at 5697.834 kb on + strand, within Pf6N2E2_4940at 5697.834 kb on + strand, within Pf6N2E2_4940at 5697.835 kb on - strand, within Pf6N2E2_4940at 5697.835 kb on - strand, within Pf6N2E2_4940at 5697.835 kb on - strand, within Pf6N2E2_4940at 5697.862 kb on - strandat 5697.862 kb on - strandat 5697.862 kb on - strandat 5697.912 kb on + strandat 5697.912 kb on + strandat 5697.912 kb on + strandat 5697.912 kb on + strandat 5697.913 kb on - strandat 5697.913 kb on - strandat 5697.960 kb on + strandat 5697.960 kb on + strandat 5697.961 kb on - strandat 5697.961 kb on - strandat 5697.961 kb on - strandat 5697.997 kb on - strandat 5697.997 kb on - strandat 5697.997 kb on - strandat 5698.181 kb on + strand, within Pf6N2E2_4941at 5698.203 kb on - strand, within Pf6N2E2_4941at 5698.358 kb on - strand, within Pf6N2E2_4941at 5698.358 kb on - strand, within Pf6N2E2_4941at 5698.358 kb on - strand, within Pf6N2E2_4941at 5698.358 kb on - strand, within Pf6N2E2_4941at 5698.358 kb on - strand, within Pf6N2E2_4941at 5698.615 kb on - strand, within Pf6N2E2_4941at 5698.615 kb on - strand, within Pf6N2E2_4941at 5698.623 kb on + strand, within Pf6N2E2_4941at 5698.623 kb on + strand, within Pf6N2E2_4941at 5698.623 kb on + strand, within Pf6N2E2_4941at 5698.623 kb on + strand, within Pf6N2E2_4941at 5698.623 kb on + strand, within Pf6N2E2_4941at 5698.623 kb on + strand, within Pf6N2E2_4941at 5698.623 kb on + strand, within Pf6N2E2_4941at 5698.623 kb on + strand, within Pf6N2E2_4941at 5698.623 kb on + strand, within Pf6N2E2_4941at 5698.624 kb on - strand, within Pf6N2E2_4941at 5698.624 kb on - strand, within Pf6N2E2_4941at 5698.624 kb on - strand, within Pf6N2E2_4941at 5698.624 kb on - strand, within Pf6N2E2_4941at 5698.624 kb on - strand, within Pf6N2E2_4941at 5698.624 kb on - strand, within Pf6N2E2_4941at 5698.624 kb on - strand, within Pf6N2E2_4941at 5698.624 kb on - strand, within Pf6N2E2_4941at 5698.633 kb on - strand, within Pf6N2E2_4941at 5698.633 kb on - strand, within Pf6N2E2_4941at 5698.633 kb on - strand, within Pf6N2E2_4941at 5698.633 kb on - strand, within Pf6N2E2_4941at 5698.831 kb on - strandat 5698.914 kb on + strandat 5698.914 kb on + strandat 5698.915 kb on - strandat 5698.915 kb on - strandat 5698.915 kb on - strandat 5698.915 kb on - strandat 5698.923 kb on + strandat 5698.924 kb on - strandat 5698.924 kb on - strandat 5699.026 kb on + strandat 5699.027 kb on - strandat 5699.051 kb on + strandat 5699.051 kb on + strandat 5699.052 kb on - strandat 5699.052 kb on - strandat 5699.090 kb on + strandat 5699.090 kb on + strandat 5699.135 kb on - strandat 5699.135 kb on - strandat 5699.199 kb on + strandat 5699.199 kb on + strandat 5699.199 kb on + strandat 5699.200 kb on - strandat 5699.200 kb on - strandat 5699.200 kb on - strandat 5699.305 kb on + strand, within Pf6N2E2_4942at 5699.305 kb on + strand, within Pf6N2E2_4942at 5699.346 kb on + strand, within Pf6N2E2_4942at 5699.346 kb on + strand, within Pf6N2E2_4942at 5699.346 kb on + strand, within Pf6N2E2_4942at 5699.347 kb on - strand, within Pf6N2E2_4942at 5699.347 kb on - strand, within Pf6N2E2_4942at 5699.347 kb on - strand, within Pf6N2E2_4942at 5699.361 kb on - strand, within Pf6N2E2_4942at 5699.361 kb on - strand, within Pf6N2E2_4942at 5699.385 kb on + strand, within Pf6N2E2_4942at 5699.385 kb on + strand, within Pf6N2E2_4942at 5699.386 kb on - strand, within Pf6N2E2_4942at 5699.502 kb on + strand, within Pf6N2E2_4942at 5699.503 kb on - strand, within Pf6N2E2_4942at 5699.503 kb on - strand, within Pf6N2E2_4942at 5699.782 kb on - strandat 5699.801 kb on - strandat 5699.801 kb on - strandat 5699.801 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3
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5,697,076 - Pf6N2E2_4940 0.43 -1.2
5,697,324 + Pf6N2E2_4940 0.58 -0.6
5,697,324 + Pf6N2E2_4940 0.58 -1.0
5,697,325 - Pf6N2E2_4940 0.58 -0.6
5,697,325 - Pf6N2E2_4940 0.58 -0.7
5,697,325 - Pf6N2E2_4940 0.58 +0.4
5,697,405 + Pf6N2E2_4940 0.63 -0.6
5,697,406 - Pf6N2E2_4940 0.63 +0.4
5,697,406 - Pf6N2E2_4940 0.63 -0.8
5,697,406 - Pf6N2E2_4940 0.63 +0.4
5,697,406 - Pf6N2E2_4940 0.63 -0.6
5,697,558 + Pf6N2E2_4940 0.73 +0.4
5,697,558 + Pf6N2E2_4940 0.73 -0.6
5,697,559 - Pf6N2E2_4940 0.73 -1.4
5,697,783 + Pf6N2E2_4940 0.87 -1.9
5,697,783 + Pf6N2E2_4940 0.87 -1.9
5,697,783 + Pf6N2E2_4940 0.87 +0.4
5,697,784 - Pf6N2E2_4940 0.87 -1.9
5,697,834 + Pf6N2E2_4940 0.90 -0.2
5,697,834 + Pf6N2E2_4940 0.90 +0.4
5,697,834 + Pf6N2E2_4940 0.90 +0.4
5,697,835 - Pf6N2E2_4940 0.90 +0.1
5,697,835 - Pf6N2E2_4940 0.90 -1.2
5,697,835 - Pf6N2E2_4940 0.90 -0.6
5,697,862 - -0.6
5,697,862 - +1.0
5,697,862 - +0.4
5,697,912 + -1.2
5,697,912 + +0.4
5,697,912 + +0.4
5,697,912 + +0.4
5,697,913 - +0.2
5,697,913 - +0.4
5,697,960 + -0.2
5,697,960 + -0.8
5,697,961 - +0.4
5,697,961 - -0.2
5,697,961 - +0.4
5,697,997 - +0.4
5,697,997 - -0.8
5,697,997 - -0.5
5,698,181 + Pf6N2E2_4941 0.22 +0.4
5,698,203 - Pf6N2E2_4941 0.24 +0.4
5,698,358 - Pf6N2E2_4941 0.43 +0.4
5,698,358 - Pf6N2E2_4941 0.43 +0.4
5,698,358 - Pf6N2E2_4941 0.43 +0.4
5,698,358 - Pf6N2E2_4941 0.43 +0.4
5,698,358 - Pf6N2E2_4941 0.43 +0.4
5,698,615 - Pf6N2E2_4941 0.74 -0.6
5,698,615 - Pf6N2E2_4941 0.74 -1.0
5,698,623 + Pf6N2E2_4941 0.75 -0.5
5,698,623 + Pf6N2E2_4941 0.75 +0.0
5,698,623 + Pf6N2E2_4941 0.75 -1.2
5,698,623 + Pf6N2E2_4941 0.75 -0.6
5,698,623 + Pf6N2E2_4941 0.75 -0.6
5,698,623 + Pf6N2E2_4941 0.75 +0.4
5,698,623 + Pf6N2E2_4941 0.75 -1.4
5,698,623 + Pf6N2E2_4941 0.75 -0.4
5,698,623 + Pf6N2E2_4941 0.75 -2.2
5,698,624 - Pf6N2E2_4941 0.75 -1.2
5,698,624 - Pf6N2E2_4941 0.75 -0.6
5,698,624 - Pf6N2E2_4941 0.75 -0.6
5,698,624 - Pf6N2E2_4941 0.75 +0.4
5,698,624 - Pf6N2E2_4941 0.75 -0.5
5,698,624 - Pf6N2E2_4941 0.75 +0.4
5,698,624 - Pf6N2E2_4941 0.75 -1.0
5,698,624 - Pf6N2E2_4941 0.75 -1.9
5,698,633 - Pf6N2E2_4941 0.76 -0.2
5,698,633 - Pf6N2E2_4941 0.76 -0.6
5,698,633 - Pf6N2E2_4941 0.76 -1.6
5,698,633 - Pf6N2E2_4941 0.76 -0.6
5,698,831 - +0.4
5,698,914 + -0.6
5,698,914 + +0.4
5,698,915 - -1.2
5,698,915 - -1.4
5,698,915 - +0.4
5,698,915 - +0.4
5,698,923 + -1.2
5,698,924 - -1.2
5,698,924 - +0.4
5,699,026 + -0.3
5,699,027 - -1.8
5,699,051 + +0.4
5,699,051 + +0.2
5,699,052 - -0.6
5,699,052 - +0.4
5,699,090 + -0.6
5,699,090 + -1.6
5,699,135 - -0.6
5,699,135 - +0.4
5,699,199 + +0.4
5,699,199 + +0.4
5,699,199 + +0.4
5,699,200 - -0.4
5,699,200 - +0.4
5,699,200 - +0.0
5,699,305 + Pf6N2E2_4942 0.18 -1.9
5,699,305 + Pf6N2E2_4942 0.18 +0.4
5,699,346 + Pf6N2E2_4942 0.25 -1.9
5,699,346 + Pf6N2E2_4942 0.25 +0.4
5,699,346 + Pf6N2E2_4942 0.25 -0.6
5,699,347 - Pf6N2E2_4942 0.25 -0.6
5,699,347 - Pf6N2E2_4942 0.25 +0.4
5,699,347 - Pf6N2E2_4942 0.25 -0.6
5,699,361 - Pf6N2E2_4942 0.27 -1.2
5,699,361 - Pf6N2E2_4942 0.27 -0.2
5,699,385 + Pf6N2E2_4942 0.31 +0.4
5,699,385 + Pf6N2E2_4942 0.31 +0.4
5,699,386 - Pf6N2E2_4942 0.32 +0.4
5,699,502 + Pf6N2E2_4942 0.52 +0.4
5,699,503 - Pf6N2E2_4942 0.52 -0.6
5,699,503 - Pf6N2E2_4942 0.52 -0.6
5,699,782 - +0.4
5,699,801 - -0.5
5,699,801 - -1.2
5,699,801 - -1.6

Or see this region's nucleotide sequence