Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4742

Experiment: Ying_all64 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4740 and Pf6N2E2_4741 are separated by 32 nucleotidesPf6N2E2_4741 and Pf6N2E2_4742 are separated by 22 nucleotidesPf6N2E2_4742 and Pf6N2E2_4743 are separated by 80 nucleotidesPf6N2E2_4743 and Pf6N2E2_4744 overlap by 4 nucleotides Pf6N2E2_4740 - Inner membrane protein CreD, at 5,477,197 to 5,478,570 _4740 Pf6N2E2_4741 - hypothetical protein, at 5,478,603 to 5,478,731 _4741 Pf6N2E2_4742 - Glutathione S-transferase family protein, at 5,478,754 to 5,479,383 _4742 Pf6N2E2_4743 - hypothetical protein, at 5,479,464 to 5,479,643 _4743 Pf6N2E2_4744 - putative iron-regulated membrane protein, at 5,479,640 to 5,480,770 _4744 Position (kb) 5478 5479 5480Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5477.926 kb on + strand, within Pf6N2E2_4740at 5477.926 kb on + strand, within Pf6N2E2_4740at 5477.926 kb on + strand, within Pf6N2E2_4740at 5477.926 kb on + strand, within Pf6N2E2_4740at 5477.927 kb on - strand, within Pf6N2E2_4740at 5477.927 kb on - strand, within Pf6N2E2_4740at 5477.927 kb on - strand, within Pf6N2E2_4740at 5477.927 kb on - strand, within Pf6N2E2_4740at 5477.927 kb on - strand, within Pf6N2E2_4740at 5477.927 kb on - strand, within Pf6N2E2_4740at 5478.036 kb on + strand, within Pf6N2E2_4740at 5478.037 kb on - strand, within Pf6N2E2_4740at 5478.037 kb on - strand, within Pf6N2E2_4740at 5478.097 kb on + strand, within Pf6N2E2_4740at 5478.124 kb on + strand, within Pf6N2E2_4740at 5478.124 kb on + strand, within Pf6N2E2_4740at 5478.124 kb on + strand, within Pf6N2E2_4740at 5478.124 kb on + strand, within Pf6N2E2_4740at 5478.124 kb on + strand, within Pf6N2E2_4740at 5478.124 kb on + strand, within Pf6N2E2_4740at 5478.125 kb on - strand, within Pf6N2E2_4740at 5478.125 kb on - strand, within Pf6N2E2_4740at 5478.125 kb on - strand, within Pf6N2E2_4740at 5478.125 kb on - strand, within Pf6N2E2_4740at 5478.125 kb on - strand, within Pf6N2E2_4740at 5478.125 kb on - strand, within Pf6N2E2_4740at 5478.125 kb on - strand, within Pf6N2E2_4740at 5478.125 kb on - strand, within Pf6N2E2_4740at 5478.209 kb on - strand, within Pf6N2E2_4740at 5478.209 kb on - strand, within Pf6N2E2_4740at 5478.241 kb on + strand, within Pf6N2E2_4740at 5478.241 kb on + strand, within Pf6N2E2_4740at 5478.241 kb on + strand, within Pf6N2E2_4740at 5478.242 kb on - strand, within Pf6N2E2_4740at 5478.289 kb on + strand, within Pf6N2E2_4740at 5478.290 kb on - strand, within Pf6N2E2_4740at 5478.290 kb on - strand, within Pf6N2E2_4740at 5478.331 kb on + strand, within Pf6N2E2_4740at 5478.331 kb on + strand, within Pf6N2E2_4740at 5478.331 kb on + strand, within Pf6N2E2_4740at 5478.331 kb on + strand, within Pf6N2E2_4740at 5478.331 kb on + strand, within Pf6N2E2_4740at 5478.331 kb on + strand, within Pf6N2E2_4740at 5478.331 kb on + strand, within Pf6N2E2_4740at 5478.331 kb on + strand, within Pf6N2E2_4740at 5478.331 kb on + strand, within Pf6N2E2_4740at 5478.332 kb on - strand, within Pf6N2E2_4740at 5478.332 kb on - strand, within Pf6N2E2_4740at 5478.332 kb on - strand, within Pf6N2E2_4740at 5478.332 kb on - strand, within Pf6N2E2_4740at 5478.332 kb on - strand, within Pf6N2E2_4740at 5478.332 kb on - strand, within Pf6N2E2_4740at 5478.332 kb on - strand, within Pf6N2E2_4740at 5478.332 kb on - strand, within Pf6N2E2_4740at 5478.332 kb on - strand, within Pf6N2E2_4740at 5478.332 kb on - strand, within Pf6N2E2_4740at 5478.332 kb on - strand, within Pf6N2E2_4740at 5478.332 kb on - strand, within Pf6N2E2_4740at 5478.397 kb on + strand, within Pf6N2E2_4740at 5478.397 kb on + strand, within Pf6N2E2_4740at 5478.397 kb on + strand, within Pf6N2E2_4740at 5478.398 kb on - strand, within Pf6N2E2_4740at 5478.398 kb on - strand, within Pf6N2E2_4740at 5478.398 kb on - strand, within Pf6N2E2_4740at 5478.409 kb on + strand, within Pf6N2E2_4740at 5478.433 kb on + strandat 5478.433 kb on + strandat 5478.619 kb on + strand, within Pf6N2E2_4741at 5478.620 kb on - strand, within Pf6N2E2_4741at 5478.620 kb on - strand, within Pf6N2E2_4741at 5478.626 kb on + strand, within Pf6N2E2_4741at 5478.626 kb on + strand, within Pf6N2E2_4741at 5478.627 kb on - strand, within Pf6N2E2_4741at 5478.627 kb on - strand, within Pf6N2E2_4741at 5478.704 kb on + strand, within Pf6N2E2_4741at 5478.704 kb on + strand, within Pf6N2E2_4741at 5478.704 kb on + strand, within Pf6N2E2_4741at 5478.705 kb on - strand, within Pf6N2E2_4741at 5478.705 kb on - strand, within Pf6N2E2_4741at 5478.834 kb on + strand, within Pf6N2E2_4742at 5478.834 kb on + strand, within Pf6N2E2_4742at 5478.835 kb on - strand, within Pf6N2E2_4742at 5479.019 kb on - strand, within Pf6N2E2_4742at 5479.415 kb on - strandat 5479.419 kb on + strandat 5479.605 kb on - strand, within Pf6N2E2_4743at 5479.705 kb on - strandat 5479.705 kb on - strandat 5479.705 kb on - strandat 5479.780 kb on - strand, within Pf6N2E2_4744at 5479.824 kb on + strand, within Pf6N2E2_4744at 5479.824 kb on + strand, within Pf6N2E2_4744at 5479.825 kb on - strand, within Pf6N2E2_4744at 5479.825 kb on - strand, within Pf6N2E2_4744at 5479.825 kb on - strand, within Pf6N2E2_4744at 5480.271 kb on + strand, within Pf6N2E2_4744at 5480.272 kb on - strand, within Pf6N2E2_4744at 5480.272 kb on - strand, within Pf6N2E2_4744at 5480.272 kb on - strand, within Pf6N2E2_4744

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3
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5,477,926 + Pf6N2E2_4740 0.53 +0.5
5,477,926 + Pf6N2E2_4740 0.53 +0.5
5,477,926 + Pf6N2E2_4740 0.53 +0.5
5,477,926 + Pf6N2E2_4740 0.53 +0.5
5,477,927 - Pf6N2E2_4740 0.53 -0.5
5,477,927 - Pf6N2E2_4740 0.53 +0.2
5,477,927 - Pf6N2E2_4740 0.53 -0.5
5,477,927 - Pf6N2E2_4740 0.53 -1.1
5,477,927 - Pf6N2E2_4740 0.53 +0.5
5,477,927 - Pf6N2E2_4740 0.53 -0.4
5,478,036 + Pf6N2E2_4740 0.61 -0.5
5,478,037 - Pf6N2E2_4740 0.61 -1.8
5,478,037 - Pf6N2E2_4740 0.61 -1.1
5,478,097 + Pf6N2E2_4740 0.66 -2.8
5,478,124 + Pf6N2E2_4740 0.67 +1.0
5,478,124 + Pf6N2E2_4740 0.67 +0.5
5,478,124 + Pf6N2E2_4740 0.67 -0.5
5,478,124 + Pf6N2E2_4740 0.67 +0.5
5,478,124 + Pf6N2E2_4740 0.67 +0.5
5,478,124 + Pf6N2E2_4740 0.67 +0.5
5,478,125 - Pf6N2E2_4740 0.68 -2.1
5,478,125 - Pf6N2E2_4740 0.68 +0.5
5,478,125 - Pf6N2E2_4740 0.68 -1.1
5,478,125 - Pf6N2E2_4740 0.68 -0.5
5,478,125 - Pf6N2E2_4740 0.68 +0.5
5,478,125 - Pf6N2E2_4740 0.68 -0.5
5,478,125 - Pf6N2E2_4740 0.68 -0.8
5,478,125 - Pf6N2E2_4740 0.68 +0.5
5,478,209 - Pf6N2E2_4740 0.74 -0.5
5,478,209 - Pf6N2E2_4740 0.74 -0.4
5,478,241 + Pf6N2E2_4740 0.76 -1.1
5,478,241 + Pf6N2E2_4740 0.76 +0.5
5,478,241 + Pf6N2E2_4740 0.76 -0.5
5,478,242 - Pf6N2E2_4740 0.76 +0.3
5,478,289 + Pf6N2E2_4740 0.79 +0.5
5,478,290 - Pf6N2E2_4740 0.80 -0.8
5,478,290 - Pf6N2E2_4740 0.80 -0.5
5,478,331 + Pf6N2E2_4740 0.83 -1.2
5,478,331 + Pf6N2E2_4740 0.83 +0.5
5,478,331 + Pf6N2E2_4740 0.83 +0.5
5,478,331 + Pf6N2E2_4740 0.83 -1.1
5,478,331 + Pf6N2E2_4740 0.83 +0.5
5,478,331 + Pf6N2E2_4740 0.83 -0.9
5,478,331 + Pf6N2E2_4740 0.83 -1.2
5,478,331 + Pf6N2E2_4740 0.83 +0.5
5,478,331 + Pf6N2E2_4740 0.83 +0.5
5,478,332 - Pf6N2E2_4740 0.83 -0.6
5,478,332 - Pf6N2E2_4740 0.83 -1.1
5,478,332 - Pf6N2E2_4740 0.83 +0.5
5,478,332 - Pf6N2E2_4740 0.83 +1.1
5,478,332 - Pf6N2E2_4740 0.83 -0.2
5,478,332 - Pf6N2E2_4740 0.83 +0.5
5,478,332 - Pf6N2E2_4740 0.83 +0.5
5,478,332 - Pf6N2E2_4740 0.83 +0.5
5,478,332 - Pf6N2E2_4740 0.83 -0.5
5,478,332 - Pf6N2E2_4740 0.83 -1.1
5,478,332 - Pf6N2E2_4740 0.83 -1.5
5,478,332 - Pf6N2E2_4740 0.83 +0.5
5,478,397 + Pf6N2E2_4740 0.87 -1.0
5,478,397 + Pf6N2E2_4740 0.87 -0.4
5,478,397 + Pf6N2E2_4740 0.87 -0.5
5,478,398 - Pf6N2E2_4740 0.87 +0.5
5,478,398 - Pf6N2E2_4740 0.87 -0.3
5,478,398 - Pf6N2E2_4740 0.87 +0.5
5,478,409 + Pf6N2E2_4740 0.88 -2.5
5,478,433 + +0.5
5,478,433 + -1.3
5,478,619 + Pf6N2E2_4741 0.12 -0.6
5,478,620 - Pf6N2E2_4741 0.13 -0.3
5,478,620 - Pf6N2E2_4741 0.13 +0.5
5,478,626 + Pf6N2E2_4741 0.18 +2.1
5,478,626 + Pf6N2E2_4741 0.18 +0.5
5,478,627 - Pf6N2E2_4741 0.19 +0.5
5,478,627 - Pf6N2E2_4741 0.19 +0.5
5,478,704 + Pf6N2E2_4741 0.78 +0.5
5,478,704 + Pf6N2E2_4741 0.78 -1.0
5,478,704 + Pf6N2E2_4741 0.78 -1.1
5,478,705 - Pf6N2E2_4741 0.79 -1.0
5,478,705 - Pf6N2E2_4741 0.79 -0.5
5,478,834 + Pf6N2E2_4742 0.13 +0.5
5,478,834 + Pf6N2E2_4742 0.13 -0.8
5,478,835 - Pf6N2E2_4742 0.13 -1.1
5,479,019 - Pf6N2E2_4742 0.42 -1.8
5,479,415 - -0.0
5,479,419 + -1.2
5,479,605 - Pf6N2E2_4743 0.78 +0.5
5,479,705 - -0.8
5,479,705 - +0.5
5,479,705 - -0.5
5,479,780 - Pf6N2E2_4744 0.12 -0.8
5,479,824 + Pf6N2E2_4744 0.16 -0.8
5,479,824 + Pf6N2E2_4744 0.16 -0.3
5,479,825 - Pf6N2E2_4744 0.16 -0.4
5,479,825 - Pf6N2E2_4744 0.16 -0.5
5,479,825 - Pf6N2E2_4744 0.16 -1.5
5,480,271 + Pf6N2E2_4744 0.56 +0.5
5,480,272 - Pf6N2E2_4744 0.56 +0.5
5,480,272 - Pf6N2E2_4744 0.56 +0.5
5,480,272 - Pf6N2E2_4744 0.56 +0.5

Or see this region's nucleotide sequence