Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4695 and Pf6N2E2_4696 are separated by 279 nucleotides Pf6N2E2_4696 and Pf6N2E2_4697 are separated by 87 nucleotides Pf6N2E2_4697 and Pf6N2E2_4698 are separated by 142 nucleotides Pf6N2E2_4698 and Pf6N2E2_4699 are separated by 100 nucleotides
Pf6N2E2_4695 - putative secreted protein, at 5,428,333 to 5,429,502
_4695
Pf6N2E2_4696 - FIG00953108: hypothetical protein, at 5,429,782 to 5,430,198
_4696
Pf6N2E2_4697 - hypothetical protein, at 5,430,286 to 5,431,062
_4697
Pf6N2E2_4698 - putative DNA binding protein, at 5,431,205 to 5,431,531
_4698
Pf6N2E2_4699 - FIG00953563: hypothetical protein, at 5,431,632 to 5,432,033
_4699
Position (kb) 5430
5431
5432 Strain fitness (log2 ratio) -2
-1
0
1 at 5429.309 kb on + strand, within Pf6N2E2_4695 at 5429.309 kb on + strand, within Pf6N2E2_4695 at 5429.310 kb on - strand, within Pf6N2E2_4695 at 5429.310 kb on - strand, within Pf6N2E2_4695 at 5429.320 kb on + strand, within Pf6N2E2_4695 at 5429.320 kb on + strand, within Pf6N2E2_4695 at 5429.321 kb on - strand, within Pf6N2E2_4695 at 5429.321 kb on - strand, within Pf6N2E2_4695 at 5429.341 kb on - strand, within Pf6N2E2_4695 at 5429.375 kb on - strand, within Pf6N2E2_4695 at 5429.455 kb on + strand at 5429.455 kb on + strand at 5429.455 kb on + strand at 5429.456 kb on - strand at 5429.456 kb on - strand at 5429.456 kb on - strand at 5429.456 kb on - strand at 5429.500 kb on + strand at 5429.500 kb on + strand at 5429.500 kb on + strand at 5429.512 kb on + strand at 5429.512 kb on + strand at 5429.513 kb on - strand at 5429.575 kb on + strand at 5429.575 kb on + strand at 5429.576 kb on - strand at 5429.576 kb on - strand at 5429.578 kb on - strand at 5429.585 kb on + strand at 5429.585 kb on + strand at 5429.586 kb on - strand at 5429.586 kb on - strand at 5429.598 kb on - strand at 5429.599 kb on + strand at 5429.599 kb on + strand at 5429.599 kb on + strand at 5429.600 kb on - strand at 5429.600 kb on - strand at 5429.600 kb on - strand at 5429.604 kb on + strand at 5429.605 kb on - strand at 5429.605 kb on - strand at 5429.605 kb on - strand at 5429.607 kb on - strand at 5429.619 kb on - strand at 5429.626 kb on + strand at 5429.627 kb on - strand at 5429.629 kb on - strand at 5429.640 kb on - strand at 5429.697 kb on + strand at 5429.698 kb on - strand at 5429.708 kb on - strand at 5429.783 kb on + strand at 5429.784 kb on - strand at 5429.816 kb on + strand at 5429.816 kb on + strand at 5429.816 kb on + strand at 5429.817 kb on - strand at 5429.817 kb on - strand at 5429.817 kb on - strand at 5429.831 kb on + strand, within Pf6N2E2_4696 at 5429.831 kb on + strand, within Pf6N2E2_4696 at 5429.832 kb on - strand, within Pf6N2E2_4696 at 5429.832 kb on - strand, within Pf6N2E2_4696 at 5429.832 kb on - strand, within Pf6N2E2_4696 at 5429.832 kb on - strand, within Pf6N2E2_4696 at 5429.832 kb on - strand, within Pf6N2E2_4696 at 5430.041 kb on - strand, within Pf6N2E2_4696 at 5430.237 kb on - strand at 5430.329 kb on + strand at 5430.329 kb on + strand at 5430.329 kb on + strand at 5430.330 kb on - strand at 5430.330 kb on - strand at 5430.380 kb on + strand, within Pf6N2E2_4697 at 5430.380 kb on + strand, within Pf6N2E2_4697 at 5430.380 kb on + strand, within Pf6N2E2_4697 at 5430.380 kb on + strand, within Pf6N2E2_4697 at 5430.380 kb on + strand, within Pf6N2E2_4697 at 5430.380 kb on + strand, within Pf6N2E2_4697 at 5430.381 kb on - strand, within Pf6N2E2_4697 at 5430.381 kb on - strand, within Pf6N2E2_4697 at 5430.441 kb on + strand, within Pf6N2E2_4697 at 5430.442 kb on - strand, within Pf6N2E2_4697 at 5430.503 kb on + strand, within Pf6N2E2_4697 at 5430.503 kb on + strand, within Pf6N2E2_4697 at 5430.504 kb on - strand, within Pf6N2E2_4697 at 5430.504 kb on - strand, within Pf6N2E2_4697 at 5430.504 kb on - strand, within Pf6N2E2_4697 at 5430.504 kb on - strand, within Pf6N2E2_4697 at 5430.504 kb on - strand, within Pf6N2E2_4697 at 5430.504 kb on - strand, within Pf6N2E2_4697 at 5430.556 kb on - strand, within Pf6N2E2_4697 at 5430.716 kb on + strand, within Pf6N2E2_4697 at 5430.716 kb on + strand, within Pf6N2E2_4697 at 5430.716 kb on + strand, within Pf6N2E2_4697 at 5430.717 kb on - strand, within Pf6N2E2_4697 at 5430.737 kb on + strand, within Pf6N2E2_4697 at 5430.737 kb on + strand, within Pf6N2E2_4697 at 5430.737 kb on + strand, within Pf6N2E2_4697 at 5430.738 kb on - strand, within Pf6N2E2_4697 at 5430.738 kb on - strand, within Pf6N2E2_4697 at 5430.738 kb on - strand, within Pf6N2E2_4697 at 5430.738 kb on - strand, within Pf6N2E2_4697 at 5430.879 kb on + strand, within Pf6N2E2_4697 at 5430.879 kb on + strand, within Pf6N2E2_4697 at 5430.880 kb on - strand, within Pf6N2E2_4697 at 5430.880 kb on - strand, within Pf6N2E2_4697 at 5430.922 kb on + strand, within Pf6N2E2_4697 at 5430.922 kb on + strand, within Pf6N2E2_4697 at 5430.922 kb on + strand, within Pf6N2E2_4697 at 5430.922 kb on + strand, within Pf6N2E2_4697 at 5430.923 kb on - strand, within Pf6N2E2_4697 at 5430.923 kb on - strand, within Pf6N2E2_4697 at 5430.923 kb on - strand, within Pf6N2E2_4697 at 5430.923 kb on - strand, within Pf6N2E2_4697 at 5430.923 kb on - strand, within Pf6N2E2_4697 at 5430.923 kb on - strand, within Pf6N2E2_4697 at 5431.017 kb on + strand at 5431.023 kb on + strand at 5431.024 kb on - strand at 5431.024 kb on - strand at 5431.024 kb on - strand at 5431.027 kb on + strand at 5431.027 kb on + strand at 5431.028 kb on - strand at 5431.028 kb on - strand at 5431.034 kb on + strand at 5431.034 kb on + strand at 5431.034 kb on + strand at 5431.035 kb on - strand at 5431.035 kb on - strand at 5431.035 kb on - strand at 5431.035 kb on - strand at 5431.035 kb on - strand at 5431.035 kb on - strand at 5431.036 kb on + strand at 5431.036 kb on + strand at 5431.036 kb on + strand at 5431.036 kb on + strand at 5431.037 kb on - strand at 5431.037 kb on - strand at 5431.037 kb on - strand at 5431.037 kb on - strand at 5431.037 kb on - strand at 5431.037 kb on - strand at 5431.062 kb on + strand at 5431.062 kb on + strand at 5431.062 kb on + strand at 5431.062 kb on + strand at 5431.063 kb on - strand at 5431.063 kb on - strand at 5431.063 kb on - strand at 5431.078 kb on + strand at 5431.079 kb on - strand at 5431.086 kb on - strand at 5431.124 kb on + strand at 5431.125 kb on - strand at 5431.125 kb on - strand at 5431.148 kb on - strand at 5431.160 kb on - strand at 5431.160 kb on - strand at 5431.160 kb on - strand at 5431.176 kb on + strand at 5431.176 kb on + strand at 5431.176 kb on + strand at 5431.176 kb on + strand at 5431.176 kb on + strand at 5431.177 kb on - strand at 5431.177 kb on - strand at 5431.177 kb on - strand at 5431.206 kb on + strand at 5431.207 kb on - strand at 5431.207 kb on - strand at 5431.231 kb on + strand at 5431.449 kb on + strand, within Pf6N2E2_4698 at 5431.449 kb on + strand, within Pf6N2E2_4698 at 5431.449 kb on + strand, within Pf6N2E2_4698 at 5431.449 kb on + strand, within Pf6N2E2_4698 at 5431.449 kb on + strand, within Pf6N2E2_4698 at 5431.449 kb on + strand, within Pf6N2E2_4698 at 5431.449 kb on + strand, within Pf6N2E2_4698 at 5431.449 kb on + strand, within Pf6N2E2_4698 at 5431.449 kb on + strand, within Pf6N2E2_4698 at 5431.449 kb on + strand, within Pf6N2E2_4698 at 5431.449 kb on + strand, within Pf6N2E2_4698 at 5431.450 kb on - strand, within Pf6N2E2_4698 at 5431.450 kb on - strand, within Pf6N2E2_4698 at 5431.450 kb on - strand, within Pf6N2E2_4698 at 5431.450 kb on - strand, within Pf6N2E2_4698 at 5431.450 kb on - strand, within Pf6N2E2_4698 at 5431.458 kb on + strand, within Pf6N2E2_4698 at 5431.511 kb on - strand at 5431.516 kb on + strand at 5431.516 kb on + strand at 5431.516 kb on + strand at 5431.516 kb on + strand at 5431.516 kb on + strand at 5431.516 kb on + strand at 5431.517 kb on - strand at 5431.517 kb on - strand at 5431.517 kb on - strand at 5431.517 kb on - strand at 5431.517 kb on - strand at 5431.517 kb on - strand at 5431.517 kb on - strand at 5431.517 kb on - strand at 5431.517 kb on - strand at 5431.517 kb on - strand at 5431.573 kb on + strand at 5431.576 kb on - strand at 5431.677 kb on + strand, within Pf6N2E2_4699 at 5431.678 kb on - strand, within Pf6N2E2_4699 at 5431.678 kb on - strand, within Pf6N2E2_4699 at 5431.678 kb on - strand, within Pf6N2E2_4699 at 5431.711 kb on + strand, within Pf6N2E2_4699 at 5431.711 kb on + strand, within Pf6N2E2_4699 at 5431.712 kb on - strand, within Pf6N2E2_4699 at 5431.712 kb on - strand, within Pf6N2E2_4699 at 5431.913 kb on - strand, within Pf6N2E2_4699
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 5,429,309 + Pf6N2E2_4695 0.83 -0.5 5,429,309 + Pf6N2E2_4695 0.83 -0.9 5,429,310 - Pf6N2E2_4695 0.84 -1.1 5,429,310 - Pf6N2E2_4695 0.84 +0.5 5,429,320 + Pf6N2E2_4695 0.84 -1.1 5,429,320 + Pf6N2E2_4695 0.84 -1.1 5,429,321 - Pf6N2E2_4695 0.84 -0.4 5,429,321 - Pf6N2E2_4695 0.84 -1.1 5,429,341 - Pf6N2E2_4695 0.86 -0.5 5,429,375 - Pf6N2E2_4695 0.89 -0.5 5,429,455 + +0.1 5,429,455 + +0.5 5,429,455 + +0.3 5,429,456 - -2.1 5,429,456 - +0.5 5,429,456 - +0.5 5,429,456 - +0.5 5,429,500 + +0.5 5,429,500 + +0.5 5,429,500 + +0.5 5,429,512 + -1.4 5,429,512 + -0.8 5,429,513 - -0.6 5,429,575 + +0.5 5,429,575 + -0.7 5,429,576 - +0.5 5,429,576 - -0.5 5,429,578 - +0.5 5,429,585 + -1.5 5,429,585 + +0.5 5,429,586 - +0.5 5,429,586 - -0.5 5,429,598 - -0.5 5,429,599 + +0.5 5,429,599 + +0.5 5,429,599 + -1.1 5,429,600 - -0.7 5,429,600 - +0.5 5,429,600 - +0.5 5,429,604 + -1.1 5,429,605 - +0.5 5,429,605 - -0.5 5,429,605 - +0.5 5,429,607 - -0.2 5,429,619 - +0.5 5,429,626 + -1.5 5,429,627 - -1.0 5,429,629 - -0.5 5,429,640 - -0.5 5,429,697 + +0.5 5,429,698 - +0.5 5,429,708 - +0.5 5,429,783 + -0.5 5,429,784 - -0.5 5,429,816 + +0.5 5,429,816 + -0.5 5,429,816 + +0.5 5,429,817 - +0.5 5,429,817 - -1.6 5,429,817 - -0.8 5,429,831 + Pf6N2E2_4696 0.12 -0.5 5,429,831 + Pf6N2E2_4696 0.12 -0.5 5,429,832 - Pf6N2E2_4696 0.12 +0.5 5,429,832 - Pf6N2E2_4696 0.12 -1.5 5,429,832 - Pf6N2E2_4696 0.12 -1.1 5,429,832 - Pf6N2E2_4696 0.12 +0.5 5,429,832 - Pf6N2E2_4696 0.12 -0.5 5,430,041 - Pf6N2E2_4696 0.62 -1.5 5,430,237 - +0.1 5,430,329 + +0.5 5,430,329 + -2.1 5,430,329 + +0.5 5,430,330 - +0.5 5,430,330 - -0.2 5,430,380 + Pf6N2E2_4697 0.12 -0.4 5,430,380 + Pf6N2E2_4697 0.12 -0.3 5,430,380 + Pf6N2E2_4697 0.12 -0.5 5,430,380 + Pf6N2E2_4697 0.12 +1.1 5,430,380 + Pf6N2E2_4697 0.12 -0.6 5,430,380 + Pf6N2E2_4697 0.12 +0.5 5,430,381 - Pf6N2E2_4697 0.12 -0.5 5,430,381 - Pf6N2E2_4697 0.12 +0.5 5,430,441 + Pf6N2E2_4697 0.20 -0.5 5,430,442 - Pf6N2E2_4697 0.20 -0.5 5,430,503 + Pf6N2E2_4697 0.28 -0.3 5,430,503 + Pf6N2E2_4697 0.28 -0.5 5,430,504 - Pf6N2E2_4697 0.28 +0.5 5,430,504 - Pf6N2E2_4697 0.28 +0.5 5,430,504 - Pf6N2E2_4697 0.28 -1.5 5,430,504 - Pf6N2E2_4697 0.28 -0.5 5,430,504 - Pf6N2E2_4697 0.28 -0.5 5,430,504 - Pf6N2E2_4697 0.28 +0.5 5,430,556 - Pf6N2E2_4697 0.35 +0.5 5,430,716 + Pf6N2E2_4697 0.55 -1.1 5,430,716 + Pf6N2E2_4697 0.55 -0.5 5,430,716 + Pf6N2E2_4697 0.55 +0.5 5,430,717 - Pf6N2E2_4697 0.55 -0.3 5,430,737 + Pf6N2E2_4697 0.58 -0.2 5,430,737 + Pf6N2E2_4697 0.58 +0.5 5,430,737 + Pf6N2E2_4697 0.58 +0.5 5,430,738 - Pf6N2E2_4697 0.58 +0.5 5,430,738 - Pf6N2E2_4697 0.58 +0.5 5,430,738 - Pf6N2E2_4697 0.58 +0.5 5,430,738 - Pf6N2E2_4697 0.58 +0.5 5,430,879 + Pf6N2E2_4697 0.76 +0.5 5,430,879 + Pf6N2E2_4697 0.76 -1.8 5,430,880 - Pf6N2E2_4697 0.76 -0.5 5,430,880 - Pf6N2E2_4697 0.76 -0.5 5,430,922 + Pf6N2E2_4697 0.82 -0.5 5,430,922 + Pf6N2E2_4697 0.82 -1.3 5,430,922 + Pf6N2E2_4697 0.82 +0.5 5,430,922 + Pf6N2E2_4697 0.82 -1.1 5,430,923 - Pf6N2E2_4697 0.82 +0.5 5,430,923 - Pf6N2E2_4697 0.82 +0.5 5,430,923 - Pf6N2E2_4697 0.82 -0.5 5,430,923 - Pf6N2E2_4697 0.82 -1.5 5,430,923 - Pf6N2E2_4697 0.82 +0.5 5,430,923 - Pf6N2E2_4697 0.82 -0.5 5,431,017 + -1.8 5,431,023 + +0.5 5,431,024 - +0.5 5,431,024 - -0.5 5,431,024 - -0.2 5,431,027 + +0.5 5,431,027 + -0.7 5,431,028 - -0.5 5,431,028 - -1.1 5,431,034 + -0.5 5,431,034 + -1.7 5,431,034 + -0.7 5,431,035 - -0.5 5,431,035 - -0.5 5,431,035 - -1.1 5,431,035 - +0.5 5,431,035 - +0.5 5,431,035 - -0.5 5,431,036 + +0.5 5,431,036 + -0.5 5,431,036 + -2.1 5,431,036 + -0.5 5,431,037 - -0.3 5,431,037 - -0.7 5,431,037 - -1.1 5,431,037 - -0.5 5,431,037 - -0.4 5,431,037 - -1.8 5,431,062 + +0.5 5,431,062 + -0.5 5,431,062 + +0.5 5,431,062 + -0.5 5,431,063 - -0.5 5,431,063 - +0.5 5,431,063 - +0.5 5,431,078 + -0.5 5,431,079 - -1.1 5,431,086 - +0.5 5,431,124 + -1.1 5,431,125 - +0.5 5,431,125 - +0.8 5,431,148 - +0.5 5,431,160 - -1.1 5,431,160 - +0.5 5,431,160 - -0.7 5,431,176 + +0.5 5,431,176 + +1.5 5,431,176 + +0.0 5,431,176 + +0.5 5,431,176 + -0.9 5,431,177 - -0.8 5,431,177 - -0.4 5,431,177 - -1.5 5,431,206 + -0.5 5,431,207 - -1.1 5,431,207 - +0.4 5,431,231 + +0.5 5,431,449 + Pf6N2E2_4698 0.75 +0.2 5,431,449 + Pf6N2E2_4698 0.75 +0.5 5,431,449 + Pf6N2E2_4698 0.75 +0.2 5,431,449 + Pf6N2E2_4698 0.75 -0.2 5,431,449 + Pf6N2E2_4698 0.75 -0.4 5,431,449 + Pf6N2E2_4698 0.75 -1.1 5,431,449 + Pf6N2E2_4698 0.75 -0.1 5,431,449 + Pf6N2E2_4698 0.75 -0.5 5,431,449 + Pf6N2E2_4698 0.75 +0.5 5,431,449 + Pf6N2E2_4698 0.75 +0.7 5,431,449 + Pf6N2E2_4698 0.75 -0.1 5,431,450 - Pf6N2E2_4698 0.75 -0.8 5,431,450 - Pf6N2E2_4698 0.75 +0.5 5,431,450 - Pf6N2E2_4698 0.75 -0.8 5,431,450 - Pf6N2E2_4698 0.75 -1.5 5,431,450 - Pf6N2E2_4698 0.75 +0.5 5,431,458 + Pf6N2E2_4698 0.77 -1.1 5,431,511 - -0.5 5,431,516 + +0.5 5,431,516 + -1.8 5,431,516 + -1.1 5,431,516 + -0.5 5,431,516 + +0.5 5,431,516 + -0.3 5,431,517 - -0.5 5,431,517 - +0.5 5,431,517 - +0.3 5,431,517 - -0.5 5,431,517 - +0.5 5,431,517 - -1.1 5,431,517 - -0.4 5,431,517 - -1.1 5,431,517 - +0.0 5,431,517 - -0.3 5,431,573 + -0.5 5,431,576 - +0.5 5,431,677 + Pf6N2E2_4699 0.11 -0.5 5,431,678 - Pf6N2E2_4699 0.11 +0.5 5,431,678 - Pf6N2E2_4699 0.11 -0.9 5,431,678 - Pf6N2E2_4699 0.11 +0.5 5,431,711 + Pf6N2E2_4699 0.20 +0.2 5,431,711 + Pf6N2E2_4699 0.20 -0.5 5,431,712 - Pf6N2E2_4699 0.20 -1.1 5,431,712 - Pf6N2E2_4699 0.20 -0.5 5,431,913 - Pf6N2E2_4699 0.70 +0.5
Or see this region's nucleotide sequence