Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2435

Experiment: Ying_all64 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 3
2,881,272	+		Pf6N2E2_2433	0.60	+0.3
2,881,272	+		Pf6N2E2_2433	0.60	-1.0
2,881,272	+		Pf6N2E2_2433	0.60	-0.7
2,881,273	-		Pf6N2E2_2433	0.61	+0.3
2,881,273	-		Pf6N2E2_2433	0.61	-0.7
2,881,273	-		Pf6N2E2_2433	0.61	+0.3
2,881,273	-		Pf6N2E2_2433	0.61	-1.2
2,881,308	+		Pf6N2E2_2433	0.69	-0.1
2,881,308	+		Pf6N2E2_2433	0.69	+0.3
2,881,308	+		Pf6N2E2_2433	0.69	+2.7
2,881,357	-		Pf6N2E2_2433	0.82	-0.7
2,881,357	-		Pf6N2E2_2433	0.82	+0.3
2,881,744	+				-0.6
2,881,744	+				+0.3
2,881,744	+				+0.3
2,881,868	+				-0.7
2,881,868	+				-1.2
2,881,887	+				+0.9
2,881,887	+				+0.3
2,881,888	-				-0.7
2,881,888	-				+0.2
2,881,888	-				+0.3
2,881,888	-				-0.7
2,881,889	+				-1.6
2,881,889	+				-0.7
2,881,890	-				+0.3
2,881,890	-				+0.3
2,881,890	-				+0.1
2,881,890	-				+0.3
2,881,924	-				-1.0
2,881,924	-				-0.7
2,881,924	-				-0.0
2,882,134	+		Pf6N2E2_2435	0.13	-1.2
2,882,135	-		Pf6N2E2_2435	0.13	+0.3
2,882,135	-		Pf6N2E2_2435	0.13	+0.3
2,882,447	+		Pf6N2E2_2435	0.37	-0.7
2,882,448	-		Pf6N2E2_2435	0.37	+0.3
2,882,480	+		Pf6N2E2_2435	0.39	+0.3
2,882,480	+		Pf6N2E2_2435	0.39	-0.7
2,882,480	+		Pf6N2E2_2435	0.39	-1.2
2,882,480	+		Pf6N2E2_2435	0.39	+0.3
2,882,481	-		Pf6N2E2_2435	0.39	+0.3
2,882,498	+		Pf6N2E2_2435	0.41	+0.3
2,882,499	-		Pf6N2E2_2435	0.41	+0.3
2,882,499	-		Pf6N2E2_2435	0.41	+0.3
2,882,499	-		Pf6N2E2_2435	0.41	-0.7
2,882,507	+		Pf6N2E2_2435	0.41	+0.3
2,882,508	-		Pf6N2E2_2435	0.41	-1.5
2,882,508	-		Pf6N2E2_2435	0.41	-0.8
2,882,544	-		Pf6N2E2_2435	0.44	-0.7
2,882,690	+		Pf6N2E2_2435	0.55	+0.3
2,882,950	+		Pf6N2E2_2435	0.75	-0.2
2,882,950	+		Pf6N2E2_2435	0.75	-1.2
2,882,951	-		Pf6N2E2_2435	0.75	-1.2
2,882,951	-		Pf6N2E2_2435	0.75	-0.7
2,882,951	-		Pf6N2E2_2435	0.75	+0.3
2,882,951	-		Pf6N2E2_2435	0.75	+0.3
2,882,951	-		Pf6N2E2_2435	0.75	-0.5
2,882,951	-		Pf6N2E2_2435	0.75	+0.3
2,882,951	-		Pf6N2E2_2435	0.75	+0.3
2,882,951	-		Pf6N2E2_2435	0.75	-0.7
2,882,951	-		Pf6N2E2_2435	0.75	-1.2
2,882,951	-		Pf6N2E2_2435	0.75	-0.7
2,883,051	-		Pf6N2E2_2435	0.82	-0.7
2,883,239	+				-1.8
2,883,239	+				-1.1
2,883,239	+				-2.2
2,883,239	+				-0.7
2,883,239	+				-0.7
2,883,240	-				-0.3
2,883,240	-				-1.7
2,883,284	+				-0.2
2,883,399	-				+0.3
2,883,403	-				+0.3
2,883,407	-				+0.3
2,883,407	-				+0.1
2,883,412	-				-0.7
2,883,412	-				+0.3
2,883,412	-				+0.3
2,883,412	-				+0.3
2,883,412	-				-1.0
2,883,412	-				-0.7
2,883,419	-				-0.8
2,883,479	-				-0.6
2,883,531	-				+0.3
2,883,543	-				-0.7
2,883,553	-				+0.3
2,883,636	-				-0.7
2,883,671	+				-0.7
2,883,752	-		Pf6N2E2_2436	0.12	+0.3
2,883,753	+		Pf6N2E2_2436	0.12	+0.3
2,883,753	+		Pf6N2E2_2436	0.12	+0.3
2,883,753	+		Pf6N2E2_2436	0.12	-1.2
2,883,754	-		Pf6N2E2_2436	0.12	-1.2
2,883,754	-		Pf6N2E2_2436	0.12	+0.3
2,883,973	+		Pf6N2E2_2436	0.47	+0.3
2,884,038	+		Pf6N2E2_2436	0.58	-1.2
2,884,039	-		Pf6N2E2_2436	0.58	+0.3
2,884,042	+		Pf6N2E2_2436	0.58	-0.7
2,884,043	-		Pf6N2E2_2436	0.59	-0.7
2,884,043	-		Pf6N2E2_2436	0.59	-0.2
2,884,164	+		Pf6N2E2_2436	0.78	-0.7
2,884,203	+		Pf6N2E2_2436	0.84	-0.7
2,884,204	-		Pf6N2E2_2436	0.84	-0.5
2,884,216	-		Pf6N2E2_2436	0.86	+0.3
2,884,220	-		Pf6N2E2_2436	0.87	+0.3