Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_182

Experiment: Ying_all64 rep C; time point 3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_6104 and Pf6N2E2_181 are separated by 193 nucleotidesPf6N2E2_181 and Pf6N2E2_182 overlap by 26 nucleotidesPf6N2E2_182 and Pf6N2E2_183 are separated by 320 nucleotides Pf6N2E2_6104 - tRNA-Pro-GGG, at 231,035 to 231,108 _6104 Pf6N2E2_181 - Two-component response regulator, at 231,302 to 231,994 _181 Pf6N2E2_182 - Two-component hybrid sensor and regulator, at 231,969 to 235,361 _182 Pf6N2E2_183 - Urea ABC transporter, urea binding protein, at 235,682 to 236,926 _183 Position (kb) 231 232 233 234 235 236Strain fitness (log2 ratio) -2 -1 0 1at 231.128 kb on - strandat 231.218 kb on - strandat 231.283 kb on + strandat 231.283 kb on + strandat 231.283 kb on + strandat 231.283 kb on + strandat 231.283 kb on + strandat 231.283 kb on + strandat 231.284 kb on - strandat 231.374 kb on + strand, within Pf6N2E2_181at 231.374 kb on + strand, within Pf6N2E2_181at 231.375 kb on - strand, within Pf6N2E2_181at 231.375 kb on - strand, within Pf6N2E2_181at 231.375 kb on - strand, within Pf6N2E2_181at 231.380 kb on + strand, within Pf6N2E2_181at 231.380 kb on + strand, within Pf6N2E2_181at 231.380 kb on + strand, within Pf6N2E2_181at 231.381 kb on - strand, within Pf6N2E2_181at 231.381 kb on - strand, within Pf6N2E2_181at 231.390 kb on + strand, within Pf6N2E2_181at 231.390 kb on + strand, within Pf6N2E2_181at 231.390 kb on + strand, within Pf6N2E2_181at 231.390 kb on + strand, within Pf6N2E2_181at 231.390 kb on + strand, within Pf6N2E2_181at 231.390 kb on + strand, within Pf6N2E2_181at 231.390 kb on + strand, within Pf6N2E2_181at 231.390 kb on + strand, within Pf6N2E2_181at 231.390 kb on + strand, within Pf6N2E2_181at 231.390 kb on + strand, within Pf6N2E2_181at 231.391 kb on - strand, within Pf6N2E2_181at 231.391 kb on - strand, within Pf6N2E2_181at 231.391 kb on - strand, within Pf6N2E2_181at 231.391 kb on - strand, within Pf6N2E2_181at 231.391 kb on - strand, within Pf6N2E2_181at 231.391 kb on - strand, within Pf6N2E2_181at 231.391 kb on - strand, within Pf6N2E2_181at 231.391 kb on - strand, within Pf6N2E2_181at 231.391 kb on - strand, within Pf6N2E2_181at 231.391 kb on - strand, within Pf6N2E2_181at 231.667 kb on - strand, within Pf6N2E2_181at 231.667 kb on - strand, within Pf6N2E2_181at 231.891 kb on + strand, within Pf6N2E2_181at 231.892 kb on - strand, within Pf6N2E2_181at 231.892 kb on - strand, within Pf6N2E2_181at 232.133 kb on - strandat 232.284 kb on + strandat 232.285 kb on - strandat 232.300 kb on + strandat 232.535 kb on + strand, within Pf6N2E2_182at 232.582 kb on - strand, within Pf6N2E2_182at 232.656 kb on + strand, within Pf6N2E2_182at 232.656 kb on + strand, within Pf6N2E2_182at 232.853 kb on + strand, within Pf6N2E2_182at 232.854 kb on - strand, within Pf6N2E2_182at 232.854 kb on - strand, within Pf6N2E2_182at 232.892 kb on + strand, within Pf6N2E2_182at 232.892 kb on + strand, within Pf6N2E2_182at 232.892 kb on + strand, within Pf6N2E2_182at 232.892 kb on + strand, within Pf6N2E2_182at 232.892 kb on + strand, within Pf6N2E2_182at 232.892 kb on + strand, within Pf6N2E2_182at 232.893 kb on - strand, within Pf6N2E2_182at 232.894 kb on + strand, within Pf6N2E2_182at 232.894 kb on + strand, within Pf6N2E2_182at 232.894 kb on + strand, within Pf6N2E2_182at 232.894 kb on + strand, within Pf6N2E2_182at 232.894 kb on + strand, within Pf6N2E2_182at 232.894 kb on + strand, within Pf6N2E2_182at 232.895 kb on - strand, within Pf6N2E2_182at 232.895 kb on - strand, within Pf6N2E2_182at 232.895 kb on - strand, within Pf6N2E2_182at 232.895 kb on - strand, within Pf6N2E2_182at 232.895 kb on - strand, within Pf6N2E2_182at 232.895 kb on - strand, within Pf6N2E2_182at 232.895 kb on - strand, within Pf6N2E2_182at 232.895 kb on - strand, within Pf6N2E2_182at 233.314 kb on + strand, within Pf6N2E2_182at 233.314 kb on + strand, within Pf6N2E2_182at 233.587 kb on + strand, within Pf6N2E2_182at 233.587 kb on + strand, within Pf6N2E2_182at 233.588 kb on - strand, within Pf6N2E2_182at 233.588 kb on - strand, within Pf6N2E2_182at 233.644 kb on + strand, within Pf6N2E2_182at 233.644 kb on + strand, within Pf6N2E2_182at 233.645 kb on - strand, within Pf6N2E2_182at 233.645 kb on - strand, within Pf6N2E2_182at 233.917 kb on + strand, within Pf6N2E2_182at 233.917 kb on + strand, within Pf6N2E2_182at 233.918 kb on - strand, within Pf6N2E2_182at 233.918 kb on - strand, within Pf6N2E2_182at 233.918 kb on - strand, within Pf6N2E2_182at 233.920 kb on + strand, within Pf6N2E2_182at 234.015 kb on + strand, within Pf6N2E2_182at 234.016 kb on - strand, within Pf6N2E2_182at 234.115 kb on + strand, within Pf6N2E2_182at 234.451 kb on + strand, within Pf6N2E2_182at 234.451 kb on + strand, within Pf6N2E2_182at 234.451 kb on + strand, within Pf6N2E2_182at 234.451 kb on + strand, within Pf6N2E2_182at 234.634 kb on + strand, within Pf6N2E2_182at 234.635 kb on - strand, within Pf6N2E2_182at 234.635 kb on - strand, within Pf6N2E2_182at 234.788 kb on - strand, within Pf6N2E2_182at 234.788 kb on - strand, within Pf6N2E2_182at 234.788 kb on - strand, within Pf6N2E2_182at 234.860 kb on - strand, within Pf6N2E2_182at 234.899 kb on - strand, within Pf6N2E2_182at 234.899 kb on - strand, within Pf6N2E2_182at 234.925 kb on + strand, within Pf6N2E2_182at 234.925 kb on + strand, within Pf6N2E2_182at 234.925 kb on + strand, within Pf6N2E2_182at 234.925 kb on + strand, within Pf6N2E2_182at 234.926 kb on - strand, within Pf6N2E2_182at 234.926 kb on - strand, within Pf6N2E2_182at 234.926 kb on - strand, within Pf6N2E2_182at 234.926 kb on - strand, within Pf6N2E2_182at 234.992 kb on - strand, within Pf6N2E2_182at 235.078 kb on + strandat 235.078 kb on + strandat 235.079 kb on - strandat 235.081 kb on + strandat 235.082 kb on - strandat 235.082 kb on - strandat 235.156 kb on + strandat 235.156 kb on + strandat 235.267 kb on + strandat 235.279 kb on + strandat 235.316 kb on - strandat 235.564 kb on + strandat 235.564 kb on + strandat 235.564 kb on + strandat 235.564 kb on + strandat 235.564 kb on + strandat 235.564 kb on + strandat 235.564 kb on + strandat 235.564 kb on + strandat 235.565 kb on - strandat 235.565 kb on - strandat 235.565 kb on - strandat 235.565 kb on - strandat 235.565 kb on - strandat 235.565 kb on - strandat 235.572 kb on + strandat 235.572 kb on + strandat 235.572 kb on + strandat 235.572 kb on + strandat 235.572 kb on + strandat 235.586 kb on + strandat 235.587 kb on - strandat 235.675 kb on + strandat 235.676 kb on - strandat 235.785 kb on + strandat 235.786 kb on - strandat 235.804 kb on + strandat 236.121 kb on - strand, within Pf6N2E2_183at 236.121 kb on - strand, within Pf6N2E2_183at 236.135 kb on + strand, within Pf6N2E2_183at 236.136 kb on - strand, within Pf6N2E2_183at 236.136 kb on - strand, within Pf6N2E2_183at 236.168 kb on + strand, within Pf6N2E2_183at 236.169 kb on - strand, within Pf6N2E2_183at 236.169 kb on - strand, within Pf6N2E2_183at 236.246 kb on + strand, within Pf6N2E2_183at 236.246 kb on + strand, within Pf6N2E2_183at 236.247 kb on - strand, within Pf6N2E2_183at 236.247 kb on - strand, within Pf6N2E2_183at 236.247 kb on - strand, within Pf6N2E2_183at 236.264 kb on + strand, within Pf6N2E2_183at 236.264 kb on + strand, within Pf6N2E2_183at 236.264 kb on + strand, within Pf6N2E2_183at 236.264 kb on + strand, within Pf6N2E2_183at 236.264 kb on + strand, within Pf6N2E2_183at 236.264 kb on + strand, within Pf6N2E2_183at 236.265 kb on - strand, within Pf6N2E2_183at 236.265 kb on - strand, within Pf6N2E2_183at 236.265 kb on - strand, within Pf6N2E2_183at 236.266 kb on + strand, within Pf6N2E2_183at 236.266 kb on + strand, within Pf6N2E2_183at 236.267 kb on - strand, within Pf6N2E2_183at 236.267 kb on - strand, within Pf6N2E2_183at 236.267 kb on - strand, within Pf6N2E2_183at 236.345 kb on + strand, within Pf6N2E2_183at 236.345 kb on + strand, within Pf6N2E2_183at 236.345 kb on + strand, within Pf6N2E2_183at 236.345 kb on + strand, within Pf6N2E2_183at 236.346 kb on - strand, within Pf6N2E2_183at 236.346 kb on - strand, within Pf6N2E2_183

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3
remove
231,128 - -0.7
231,218 - -0.7
231,283 + -0.6
231,283 + -0.7
231,283 + -0.7
231,283 + +0.3
231,283 + -0.7
231,283 + -0.7
231,284 - -1.2
231,374 + Pf6N2E2_181 0.10 +0.3
231,374 + Pf6N2E2_181 0.10 +0.3
231,375 - Pf6N2E2_181 0.11 -1.3
231,375 - Pf6N2E2_181 0.11 +0.3
231,375 - Pf6N2E2_181 0.11 +0.3
231,380 + Pf6N2E2_181 0.11 -2.3
231,380 + Pf6N2E2_181 0.11 +0.3
231,380 + Pf6N2E2_181 0.11 +0.3
231,381 - Pf6N2E2_181 0.11 -1.7
231,381 - Pf6N2E2_181 0.11 -0.7
231,390 + Pf6N2E2_181 0.13 -0.7
231,390 + Pf6N2E2_181 0.13 -2.3
231,390 + Pf6N2E2_181 0.13 -0.7
231,390 + Pf6N2E2_181 0.13 -1.2
231,390 + Pf6N2E2_181 0.13 -1.0
231,390 + Pf6N2E2_181 0.13 -0.7
231,390 + Pf6N2E2_181 0.13 +0.3
231,390 + Pf6N2E2_181 0.13 +0.3
231,390 + Pf6N2E2_181 0.13 -1.0
231,390 + Pf6N2E2_181 0.13 +0.3
231,391 - Pf6N2E2_181 0.13 +0.3
231,391 - Pf6N2E2_181 0.13 +0.3
231,391 - Pf6N2E2_181 0.13 -0.5
231,391 - Pf6N2E2_181 0.13 +0.3
231,391 - Pf6N2E2_181 0.13 -0.7
231,391 - Pf6N2E2_181 0.13 -0.7
231,391 - Pf6N2E2_181 0.13 -0.7
231,391 - Pf6N2E2_181 0.13 -0.7
231,391 - Pf6N2E2_181 0.13 -0.7
231,391 - Pf6N2E2_181 0.13 -0.7
231,667 - Pf6N2E2_181 0.53 -0.7
231,667 - Pf6N2E2_181 0.53 +0.3
231,891 + Pf6N2E2_181 0.85 +0.3
231,892 - Pf6N2E2_181 0.85 -0.9
231,892 - Pf6N2E2_181 0.85 +0.3
232,133 - +0.3
232,284 + -1.5
232,285 - +0.3
232,300 + +0.3
232,535 + Pf6N2E2_182 0.17 -0.5
232,582 - Pf6N2E2_182 0.18 -0.7
232,656 + Pf6N2E2_182 0.20 -0.7
232,656 + Pf6N2E2_182 0.20 -0.7
232,853 + Pf6N2E2_182 0.26 -1.3
232,854 - Pf6N2E2_182 0.26 -1.7
232,854 - Pf6N2E2_182 0.26 +0.3
232,892 + Pf6N2E2_182 0.27 +0.3
232,892 + Pf6N2E2_182 0.27 +0.3
232,892 + Pf6N2E2_182 0.27 -1.6
232,892 + Pf6N2E2_182 0.27 -1.7
232,892 + Pf6N2E2_182 0.27 +0.3
232,892 + Pf6N2E2_182 0.27 +0.3
232,893 - Pf6N2E2_182 0.27 -1.3
232,894 + Pf6N2E2_182 0.27 -0.7
232,894 + Pf6N2E2_182 0.27 +0.3
232,894 + Pf6N2E2_182 0.27 -0.3
232,894 + Pf6N2E2_182 0.27 -0.7
232,894 + Pf6N2E2_182 0.27 +0.3
232,894 + Pf6N2E2_182 0.27 -1.1
232,895 - Pf6N2E2_182 0.27 -0.6
232,895 - Pf6N2E2_182 0.27 -1.2
232,895 - Pf6N2E2_182 0.27 +0.3
232,895 - Pf6N2E2_182 0.27 +0.3
232,895 - Pf6N2E2_182 0.27 +0.3
232,895 - Pf6N2E2_182 0.27 +0.3
232,895 - Pf6N2E2_182 0.27 -1.7
232,895 - Pf6N2E2_182 0.27 -0.7
233,314 + Pf6N2E2_182 0.40 -1.1
233,314 + Pf6N2E2_182 0.40 +0.3
233,587 + Pf6N2E2_182 0.48 -0.7
233,587 + Pf6N2E2_182 0.48 -0.7
233,588 - Pf6N2E2_182 0.48 +0.3
233,588 - Pf6N2E2_182 0.48 +0.3
233,644 + Pf6N2E2_182 0.49 -0.3
233,644 + Pf6N2E2_182 0.49 +0.3
233,645 - Pf6N2E2_182 0.49 -0.7
233,645 - Pf6N2E2_182 0.49 +0.3
233,917 + Pf6N2E2_182 0.57 -0.7
233,917 + Pf6N2E2_182 0.57 +0.3
233,918 - Pf6N2E2_182 0.57 -0.7
233,918 - Pf6N2E2_182 0.57 +0.3
233,918 - Pf6N2E2_182 0.57 -2.6
233,920 + Pf6N2E2_182 0.58 +0.3
234,015 + Pf6N2E2_182 0.60 -2.3
234,016 - Pf6N2E2_182 0.60 -1.2
234,115 + Pf6N2E2_182 0.63 -1.3
234,451 + Pf6N2E2_182 0.73 +0.3
234,451 + Pf6N2E2_182 0.73 -0.7
234,451 + Pf6N2E2_182 0.73 -0.6
234,451 + Pf6N2E2_182 0.73 -0.7
234,634 + Pf6N2E2_182 0.79 -1.3
234,635 - Pf6N2E2_182 0.79 -0.7
234,635 - Pf6N2E2_182 0.79 -0.6
234,788 - Pf6N2E2_182 0.83 +0.3
234,788 - Pf6N2E2_182 0.83 -0.7
234,788 - Pf6N2E2_182 0.83 +0.3
234,860 - Pf6N2E2_182 0.85 -0.7
234,899 - Pf6N2E2_182 0.86 -0.7
234,899 - Pf6N2E2_182 0.86 -0.4
234,925 + Pf6N2E2_182 0.87 +0.3
234,925 + Pf6N2E2_182 0.87 -1.1
234,925 + Pf6N2E2_182 0.87 +0.3
234,925 + Pf6N2E2_182 0.87 -1.3
234,926 - Pf6N2E2_182 0.87 +0.3
234,926 - Pf6N2E2_182 0.87 +0.3
234,926 - Pf6N2E2_182 0.87 -1.3
234,926 - Pf6N2E2_182 0.87 -0.7
234,992 - Pf6N2E2_182 0.89 -0.9
235,078 + +0.3
235,078 + -0.2
235,079 - -0.7
235,081 + -1.3
235,082 - -0.7
235,082 - -0.5
235,156 + +0.3
235,156 + -0.3
235,267 + -0.7
235,279 + -0.6
235,316 - +0.3
235,564 + -1.3
235,564 + +0.3
235,564 + -0.7
235,564 + +0.3
235,564 + -0.5
235,564 + -0.7
235,564 + +0.3
235,564 + -0.7
235,565 - +0.3
235,565 - +0.3
235,565 - +0.3
235,565 - -0.1
235,565 - +0.3
235,565 - -0.6
235,572 + -0.7
235,572 + -0.8
235,572 + +0.3
235,572 + -0.2
235,572 + -0.7
235,586 + +0.3
235,587 - -1.9
235,675 + -0.7
235,676 - -0.7
235,785 + -1.3
235,786 - +0.3
235,804 + +0.0
236,121 - Pf6N2E2_183 0.35 +0.3
236,121 - Pf6N2E2_183 0.35 +0.3
236,135 + Pf6N2E2_183 0.36 +0.3
236,136 - Pf6N2E2_183 0.36 +0.3
236,136 - Pf6N2E2_183 0.36 -0.2
236,168 + Pf6N2E2_183 0.39 -0.6
236,169 - Pf6N2E2_183 0.39 +0.3
236,169 - Pf6N2E2_183 0.39 -0.8
236,246 + Pf6N2E2_183 0.45 -0.7
236,246 + Pf6N2E2_183 0.45 +0.3
236,247 - Pf6N2E2_183 0.45 +0.3
236,247 - Pf6N2E2_183 0.45 -0.7
236,247 - Pf6N2E2_183 0.45 +1.3
236,264 + Pf6N2E2_183 0.47 -0.6
236,264 + Pf6N2E2_183 0.47 +0.3
236,264 + Pf6N2E2_183 0.47 +0.3
236,264 + Pf6N2E2_183 0.47 +0.3
236,264 + Pf6N2E2_183 0.47 +0.3
236,264 + Pf6N2E2_183 0.47 -0.3
236,265 - Pf6N2E2_183 0.47 -1.2
236,265 - Pf6N2E2_183 0.47 +0.8
236,265 - Pf6N2E2_183 0.47 +0.3
236,266 + Pf6N2E2_183 0.47 +0.3
236,266 + Pf6N2E2_183 0.47 -0.7
236,267 - Pf6N2E2_183 0.47 +0.3
236,267 - Pf6N2E2_183 0.47 +0.3
236,267 - Pf6N2E2_183 0.47 -0.7
236,345 + Pf6N2E2_183 0.53 -1.7
236,345 + Pf6N2E2_183 0.53 +0.2
236,345 + Pf6N2E2_183 0.53 +0.3
236,345 + Pf6N2E2_183 0.53 +0.3
236,346 - Pf6N2E2_183 0.53 -0.7
236,346 - Pf6N2E2_183 0.53 -0.7

Or see this region's nucleotide sequence