Experiment: Ying_all64 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_575 and Pf6N2E2_576 are separated by 138 nucleotides Pf6N2E2_576 and Pf6N2E2_577 are separated by 642 nucleotides
Pf6N2E2_575 - Transcriptional regulator, AraC family, at 649,505 to 650,329
_575
Pf6N2E2_576 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 650,468 to 651,430
_576
Pf6N2E2_577 - Mobile element protein, at 652,073 to 653,641
_577
Position (kb) 650
651
652 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 649.504 kb on - strand at 649.516 kb on - strand at 649.710 kb on + strand, within Pf6N2E2_575 at 649.710 kb on + strand, within Pf6N2E2_575 at 649.711 kb on - strand, within Pf6N2E2_575 at 649.780 kb on + strand, within Pf6N2E2_575 at 649.781 kb on - strand, within Pf6N2E2_575 at 649.914 kb on - strand, within Pf6N2E2_575 at 649.926 kb on + strand, within Pf6N2E2_575 at 650.052 kb on + strand, within Pf6N2E2_575 at 650.052 kb on + strand, within Pf6N2E2_575 at 650.052 kb on + strand, within Pf6N2E2_575 at 650.053 kb on - strand, within Pf6N2E2_575 at 650.053 kb on - strand, within Pf6N2E2_575 at 650.053 kb on - strand, within Pf6N2E2_575 at 650.064 kb on + strand, within Pf6N2E2_575 at 650.169 kb on + strand, within Pf6N2E2_575 at 650.169 kb on + strand, within Pf6N2E2_575 at 650.169 kb on + strand, within Pf6N2E2_575 at 650.169 kb on + strand, within Pf6N2E2_575 at 650.169 kb on + strand, within Pf6N2E2_575 at 650.170 kb on - strand, within Pf6N2E2_575 at 650.170 kb on - strand, within Pf6N2E2_575 at 650.170 kb on - strand, within Pf6N2E2_575 at 650.366 kb on + strand at 650.366 kb on + strand at 650.366 kb on + strand at 650.367 kb on - strand at 650.367 kb on - strand at 650.369 kb on + strand at 650.369 kb on + strand at 650.836 kb on + strand, within Pf6N2E2_576 at 650.848 kb on + strand, within Pf6N2E2_576 at 650.848 kb on + strand, within Pf6N2E2_576 at 650.848 kb on + strand, within Pf6N2E2_576 at 650.848 kb on + strand, within Pf6N2E2_576 at 650.848 kb on + strand, within Pf6N2E2_576 at 651.157 kb on + strand, within Pf6N2E2_576 at 651.158 kb on - strand, within Pf6N2E2_576 at 651.308 kb on + strand, within Pf6N2E2_576 at 651.375 kb on + strand at 651.376 kb on - strand at 651.376 kb on - strand at 651.401 kb on + strand at 651.401 kb on + strand at 651.401 kb on + strand at 651.402 kb on - strand at 651.429 kb on - strand at 651.461 kb on + strand at 651.461 kb on + strand at 651.461 kb on + strand at 651.462 kb on - strand at 651.462 kb on - strand at 651.476 kb on + strand at 651.476 kb on + strand at 651.476 kb on + strand at 651.477 kb on - strand at 651.477 kb on - strand at 651.511 kb on + strand at 651.512 kb on - strand at 651.528 kb on - strand at 651.564 kb on - strand at 651.564 kb on - strand at 651.601 kb on + strand at 651.604 kb on - strand at 651.604 kb on - strand at 651.645 kb on - strand at 651.645 kb on - strand at 651.645 kb on - strand at 651.708 kb on + strand at 651.708 kb on + strand at 651.708 kb on + strand at 651.708 kb on + strand at 651.711 kb on - strand at 651.711 kb on - strand at 651.782 kb on - strand at 651.824 kb on + strand at 651.840 kb on - strand at 651.840 kb on - strand at 651.840 kb on - strand at 651.840 kb on - strand at 651.844 kb on + strand at 651.844 kb on + strand at 651.848 kb on + strand at 651.849 kb on - strand at 651.849 kb on - strand at 651.866 kb on + strand at 651.875 kb on + strand at 651.876 kb on - strand at 651.876 kb on - strand at 651.936 kb on + strand at 651.936 kb on + strand at 651.937 kb on - strand at 651.946 kb on + strand at 651.946 kb on + strand at 651.947 kb on - strand at 651.985 kb on + strand at 651.985 kb on + strand at 651.986 kb on - strand at 651.986 kb on - strand at 652.025 kb on - strand at 652.025 kb on - strand at 652.039 kb on + strand at 652.040 kb on - strand at 652.040 kb on - strand at 652.155 kb on - strand at 652.155 kb on - strand at 652.159 kb on - strand at 652.304 kb on - strand, within Pf6N2E2_577 at 652.304 kb on - strand, within Pf6N2E2_577 at 652.304 kb on - strand, within Pf6N2E2_577 at 652.368 kb on + strand, within Pf6N2E2_577 at 652.368 kb on + strand, within Pf6N2E2_577 at 652.369 kb on - strand, within Pf6N2E2_577
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 3 remove 649,504 - -1.4 649,516 - +0.7 649,710 + Pf6N2E2_575 0.25 +0.2 649,710 + Pf6N2E2_575 0.25 +0.2 649,711 - Pf6N2E2_575 0.25 +0.2 649,780 + Pf6N2E2_575 0.33 -0.6 649,781 - Pf6N2E2_575 0.33 +1.2 649,914 - Pf6N2E2_575 0.50 -0.7 649,926 + Pf6N2E2_575 0.51 -0.8 650,052 + Pf6N2E2_575 0.66 +0.2 650,052 + Pf6N2E2_575 0.66 -0.6 650,052 + Pf6N2E2_575 0.66 -0.4 650,053 - Pf6N2E2_575 0.66 -0.4 650,053 - Pf6N2E2_575 0.66 -0.1 650,053 - Pf6N2E2_575 0.66 -1.4 650,064 + Pf6N2E2_575 0.68 +0.2 650,169 + Pf6N2E2_575 0.80 +0.2 650,169 + Pf6N2E2_575 0.80 -1.8 650,169 + Pf6N2E2_575 0.80 -1.7 650,169 + Pf6N2E2_575 0.80 -0.8 650,169 + Pf6N2E2_575 0.80 +0.2 650,170 - Pf6N2E2_575 0.81 +0.2 650,170 - Pf6N2E2_575 0.81 +0.2 650,170 - Pf6N2E2_575 0.81 +0.2 650,366 + +0.2 650,366 + +0.2 650,366 + -1.1 650,367 - -0.6 650,367 - +0.2 650,369 + -0.8 650,369 + +0.2 650,836 + Pf6N2E2_576 0.38 -0.8 650,848 + Pf6N2E2_576 0.39 -0.8 650,848 + Pf6N2E2_576 0.39 +0.2 650,848 + Pf6N2E2_576 0.39 -0.8 650,848 + Pf6N2E2_576 0.39 -0.4 650,848 + Pf6N2E2_576 0.39 +0.2 651,157 + Pf6N2E2_576 0.72 -0.6 651,158 - Pf6N2E2_576 0.72 +0.2 651,308 + Pf6N2E2_576 0.87 -0.5 651,375 + -0.8 651,376 - -0.8 651,376 - -0.8 651,401 + -0.8 651,401 + -0.8 651,401 + -0.8 651,402 - -0.8 651,429 - -0.8 651,461 + +0.2 651,461 + +0.2 651,461 + +1.2 651,462 - +0.2 651,462 - +0.2 651,476 + -0.0 651,476 + -0.2 651,476 + +1.0 651,477 - +0.2 651,477 - -0.8 651,511 + +0.2 651,512 - +0.2 651,528 - +0.2 651,564 - +0.2 651,564 - -0.3 651,601 + +0.2 651,604 - +0.2 651,604 - -0.9 651,645 - -0.5 651,645 - +0.2 651,645 - +0.2 651,708 + -1.4 651,708 + -0.8 651,708 + +0.2 651,708 + +0.2 651,711 - -1.6 651,711 - +0.2 651,782 - +0.2 651,824 + +0.2 651,840 - +0.2 651,840 - -0.7 651,840 - -3.3 651,840 - +0.2 651,844 + +0.2 651,844 + +0.2 651,848 + -0.8 651,849 - +0.2 651,849 - -1.2 651,866 + +0.2 651,875 + +0.2 651,876 - -1.8 651,876 - -0.8 651,936 + +0.2 651,936 + +0.2 651,937 - -0.8 651,946 + +0.2 651,946 + +0.2 651,947 - +0.2 651,985 + +0.1 651,985 + +0.2 651,986 - +0.2 651,986 - +0.2 652,025 - +0.2 652,025 - -1.4 652,039 + -0.6 652,040 - +0.2 652,040 - -0.8 652,155 - +0.2 652,155 - +0.2 652,159 - -1.3 652,304 - Pf6N2E2_577 0.15 -0.9 652,304 - Pf6N2E2_577 0.15 +0.2 652,304 - Pf6N2E2_577 0.15 +0.2 652,368 + Pf6N2E2_577 0.19 -0.8 652,368 + Pf6N2E2_577 0.19 -2.1 652,369 - Pf6N2E2_577 0.19 +0.2
Or see this region's nucleotide sequence