Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4574

Experiment: Ying_all64 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4573 and Pf6N2E2_4574 are separated by 84 nucleotidesPf6N2E2_4574 and Pf6N2E2_4575 are separated by 27 nucleotides Pf6N2E2_4573 - FIG022869: Oxidoreductase, GMC family, at 5,302,947 to 5,304,542 _4573 Pf6N2E2_4574 - FIG028932: hypothetical protein, at 5,304,627 to 5,305,172 _4574 Pf6N2E2_4575 - Coniferyl aldehyde dehydrogenase (EC 1.2.1.68), at 5,305,200 to 5,306,630 _4575 Position (kb) 5304 5305 5306Strain fitness (log2 ratio) -2 -1 0 1at 5303.751 kb on + strand, within Pf6N2E2_4573at 5303.751 kb on + strand, within Pf6N2E2_4573at 5303.751 kb on + strand, within Pf6N2E2_4573at 5303.751 kb on + strand, within Pf6N2E2_4573at 5303.752 kb on - strand, within Pf6N2E2_4573at 5303.752 kb on - strand, within Pf6N2E2_4573at 5303.752 kb on - strand, within Pf6N2E2_4573at 5303.752 kb on - strand, within Pf6N2E2_4573at 5303.752 kb on - strand, within Pf6N2E2_4573at 5303.755 kb on + strand, within Pf6N2E2_4573at 5303.755 kb on + strand, within Pf6N2E2_4573at 5303.755 kb on + strand, within Pf6N2E2_4573at 5303.755 kb on + strand, within Pf6N2E2_4573at 5303.755 kb on + strand, within Pf6N2E2_4573at 5303.755 kb on + strand, within Pf6N2E2_4573at 5303.755 kb on + strand, within Pf6N2E2_4573at 5303.756 kb on - strand, within Pf6N2E2_4573at 5303.756 kb on - strand, within Pf6N2E2_4573at 5303.756 kb on - strand, within Pf6N2E2_4573at 5303.756 kb on - strand, within Pf6N2E2_4573at 5303.756 kb on - strand, within Pf6N2E2_4573at 5303.756 kb on - strand, within Pf6N2E2_4573at 5303.878 kb on + strand, within Pf6N2E2_4573at 5303.991 kb on + strand, within Pf6N2E2_4573at 5303.991 kb on + strand, within Pf6N2E2_4573at 5303.991 kb on + strand, within Pf6N2E2_4573at 5304.020 kb on - strand, within Pf6N2E2_4573at 5304.150 kb on + strand, within Pf6N2E2_4573at 5304.150 kb on + strand, within Pf6N2E2_4573at 5304.150 kb on + strand, within Pf6N2E2_4573at 5304.150 kb on + strand, within Pf6N2E2_4573at 5304.150 kb on + strand, within Pf6N2E2_4573at 5304.150 kb on + strand, within Pf6N2E2_4573at 5304.151 kb on - strand, within Pf6N2E2_4573at 5304.151 kb on - strand, within Pf6N2E2_4573at 5304.151 kb on - strand, within Pf6N2E2_4573at 5304.299 kb on - strand, within Pf6N2E2_4573at 5304.310 kb on + strand, within Pf6N2E2_4573at 5304.311 kb on - strand, within Pf6N2E2_4573at 5304.311 kb on - strand, within Pf6N2E2_4573at 5304.490 kb on + strandat 5304.490 kb on + strandat 5304.490 kb on + strandat 5304.490 kb on + strandat 5304.491 kb on - strandat 5304.491 kb on - strandat 5304.491 kb on - strandat 5304.491 kb on - strandat 5304.491 kb on - strandat 5304.491 kb on - strandat 5304.491 kb on - strandat 5304.491 kb on - strandat 5304.557 kb on + strandat 5304.557 kb on + strandat 5304.557 kb on + strandat 5304.557 kb on + strandat 5304.557 kb on + strandat 5304.557 kb on + strandat 5304.557 kb on + strandat 5304.557 kb on + strandat 5304.557 kb on + strandat 5304.558 kb on - strandat 5304.558 kb on - strandat 5304.558 kb on - strandat 5304.558 kb on - strandat 5304.558 kb on - strandat 5304.560 kb on + strandat 5304.560 kb on + strandat 5304.560 kb on + strandat 5304.560 kb on + strandat 5304.560 kb on + strandat 5304.561 kb on - strandat 5304.561 kb on - strandat 5304.561 kb on - strandat 5304.561 kb on - strandat 5304.563 kb on + strandat 5304.683 kb on - strand, within Pf6N2E2_4574at 5304.716 kb on + strand, within Pf6N2E2_4574at 5304.716 kb on + strand, within Pf6N2E2_4574at 5304.716 kb on + strand, within Pf6N2E2_4574at 5304.716 kb on + strand, within Pf6N2E2_4574at 5304.717 kb on - strand, within Pf6N2E2_4574at 5304.717 kb on - strand, within Pf6N2E2_4574at 5304.717 kb on - strand, within Pf6N2E2_4574at 5304.717 kb on - strand, within Pf6N2E2_4574at 5304.717 kb on - strand, within Pf6N2E2_4574at 5305.152 kb on - strandat 5305.174 kb on - strandat 5305.179 kb on + strandat 5305.179 kb on + strandat 5305.179 kb on + strandat 5305.179 kb on + strandat 5305.255 kb on + strandat 5305.480 kb on + strand, within Pf6N2E2_4575at 5305.481 kb on - strand, within Pf6N2E2_4575at 5305.484 kb on - strand, within Pf6N2E2_4575at 5305.516 kb on + strand, within Pf6N2E2_4575at 5305.516 kb on + strand, within Pf6N2E2_4575at 5305.516 kb on + strand, within Pf6N2E2_4575at 5305.516 kb on + strand, within Pf6N2E2_4575at 5305.516 kb on + strand, within Pf6N2E2_4575at 5305.516 kb on + strand, within Pf6N2E2_4575at 5305.517 kb on - strand, within Pf6N2E2_4575at 5305.517 kb on - strand, within Pf6N2E2_4575at 5305.517 kb on - strand, within Pf6N2E2_4575at 5305.517 kb on - strand, within Pf6N2E2_4575at 5305.517 kb on - strand, within Pf6N2E2_4575at 5305.517 kb on - strand, within Pf6N2E2_4575at 5305.517 kb on - strand, within Pf6N2E2_4575at 5305.517 kb on - strand, within Pf6N2E2_4575at 5305.544 kb on - strand, within Pf6N2E2_4575at 5305.744 kb on + strand, within Pf6N2E2_4575at 5305.744 kb on + strand, within Pf6N2E2_4575at 5305.744 kb on + strand, within Pf6N2E2_4575at 5305.744 kb on + strand, within Pf6N2E2_4575at 5305.745 kb on - strand, within Pf6N2E2_4575at 5305.840 kb on + strand, within Pf6N2E2_4575at 5305.840 kb on + strand, within Pf6N2E2_4575at 5305.841 kb on - strand, within Pf6N2E2_4575at 5305.841 kb on - strand, within Pf6N2E2_4575

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 3
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5,303,751 + Pf6N2E2_4573 0.50 +0.5
5,303,751 + Pf6N2E2_4573 0.50 -0.5
5,303,751 + Pf6N2E2_4573 0.50 -0.5
5,303,751 + Pf6N2E2_4573 0.50 -0.7
5,303,752 - Pf6N2E2_4573 0.50 -0.5
5,303,752 - Pf6N2E2_4573 0.50 +0.5
5,303,752 - Pf6N2E2_4573 0.50 -1.1
5,303,752 - Pf6N2E2_4573 0.50 +0.5
5,303,752 - Pf6N2E2_4573 0.50 +0.5
5,303,755 + Pf6N2E2_4573 0.51 +0.5
5,303,755 + Pf6N2E2_4573 0.51 +0.5
5,303,755 + Pf6N2E2_4573 0.51 -1.1
5,303,755 + Pf6N2E2_4573 0.51 -1.1
5,303,755 + Pf6N2E2_4573 0.51 +0.5
5,303,755 + Pf6N2E2_4573 0.51 -0.5
5,303,755 + Pf6N2E2_4573 0.51 -0.3
5,303,756 - Pf6N2E2_4573 0.51 +0.5
5,303,756 - Pf6N2E2_4573 0.51 -1.1
5,303,756 - Pf6N2E2_4573 0.51 +0.5
5,303,756 - Pf6N2E2_4573 0.51 -0.5
5,303,756 - Pf6N2E2_4573 0.51 -0.5
5,303,756 - Pf6N2E2_4573 0.51 -0.5
5,303,878 + Pf6N2E2_4573 0.58 +0.5
5,303,991 + Pf6N2E2_4573 0.65 -0.5
5,303,991 + Pf6N2E2_4573 0.65 -1.1
5,303,991 + Pf6N2E2_4573 0.65 -1.1
5,304,020 - Pf6N2E2_4573 0.67 -0.7
5,304,150 + Pf6N2E2_4573 0.75 +0.8
5,304,150 + Pf6N2E2_4573 0.75 +1.2
5,304,150 + Pf6N2E2_4573 0.75 +0.5
5,304,150 + Pf6N2E2_4573 0.75 -1.8
5,304,150 + Pf6N2E2_4573 0.75 -0.6
5,304,150 + Pf6N2E2_4573 0.75 -0.5
5,304,151 - Pf6N2E2_4573 0.75 +0.5
5,304,151 - Pf6N2E2_4573 0.75 +0.5
5,304,151 - Pf6N2E2_4573 0.75 +0.1
5,304,299 - Pf6N2E2_4573 0.85 -0.6
5,304,310 + Pf6N2E2_4573 0.85 -0.8
5,304,311 - Pf6N2E2_4573 0.85 -1.1
5,304,311 - Pf6N2E2_4573 0.85 -0.7
5,304,490 + -1.1
5,304,490 + -1.5
5,304,490 + -0.5
5,304,490 + -0.6
5,304,491 - +0.5
5,304,491 - -0.5
5,304,491 - -0.8
5,304,491 - -0.5
5,304,491 - -1.3
5,304,491 - +0.5
5,304,491 - -0.5
5,304,491 - +0.5
5,304,557 + +0.5
5,304,557 + -0.6
5,304,557 + +0.2
5,304,557 + -1.1
5,304,557 + -1.1
5,304,557 + +0.5
5,304,557 + -1.1
5,304,557 + +0.5
5,304,557 + -0.6
5,304,558 - -1.1
5,304,558 - -0.3
5,304,558 - -0.5
5,304,558 - +1.1
5,304,558 - -0.1
5,304,560 + -0.8
5,304,560 + +0.5
5,304,560 + +0.5
5,304,560 + +0.5
5,304,560 + -0.5
5,304,561 - +0.5
5,304,561 - -0.5
5,304,561 - -0.5
5,304,561 - -1.4
5,304,563 + +0.5
5,304,683 - Pf6N2E2_4574 0.10 -1.6
5,304,716 + Pf6N2E2_4574 0.16 +0.5
5,304,716 + Pf6N2E2_4574 0.16 +0.5
5,304,716 + Pf6N2E2_4574 0.16 -0.5
5,304,716 + Pf6N2E2_4574 0.16 +0.5
5,304,717 - Pf6N2E2_4574 0.16 -1.3
5,304,717 - Pf6N2E2_4574 0.16 +0.5
5,304,717 - Pf6N2E2_4574 0.16 -1.1
5,304,717 - Pf6N2E2_4574 0.16 -0.5
5,304,717 - Pf6N2E2_4574 0.16 -1.1
5,305,152 - -0.3
5,305,174 - +0.8
5,305,179 + -0.5
5,305,179 + -0.5
5,305,179 + -0.5
5,305,179 + +0.3
5,305,255 + +0.5
5,305,480 + Pf6N2E2_4575 0.20 -0.4
5,305,481 - Pf6N2E2_4575 0.20 -0.7
5,305,484 - Pf6N2E2_4575 0.20 +0.5
5,305,516 + Pf6N2E2_4575 0.22 -0.1
5,305,516 + Pf6N2E2_4575 0.22 +0.5
5,305,516 + Pf6N2E2_4575 0.22 -0.5
5,305,516 + Pf6N2E2_4575 0.22 +0.5
5,305,516 + Pf6N2E2_4575 0.22 -0.4
5,305,516 + Pf6N2E2_4575 0.22 +0.1
5,305,517 - Pf6N2E2_4575 0.22 -0.5
5,305,517 - Pf6N2E2_4575 0.22 -1.1
5,305,517 - Pf6N2E2_4575 0.22 +0.5
5,305,517 - Pf6N2E2_4575 0.22 -0.8
5,305,517 - Pf6N2E2_4575 0.22 -0.5
5,305,517 - Pf6N2E2_4575 0.22 -1.5
5,305,517 - Pf6N2E2_4575 0.22 +0.5
5,305,517 - Pf6N2E2_4575 0.22 +0.5
5,305,544 - Pf6N2E2_4575 0.24 +0.5
5,305,744 + Pf6N2E2_4575 0.38 +0.5
5,305,744 + Pf6N2E2_4575 0.38 +0.5
5,305,744 + Pf6N2E2_4575 0.38 -0.5
5,305,744 + Pf6N2E2_4575 0.38 +0.5
5,305,745 - Pf6N2E2_4575 0.38 +0.5
5,305,840 + Pf6N2E2_4575 0.45 +0.5
5,305,840 + Pf6N2E2_4575 0.45 -1.1
5,305,841 - Pf6N2E2_4575 0.45 -0.5
5,305,841 - Pf6N2E2_4575 0.45 -1.1

Or see this region's nucleotide sequence