Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_452

Experiment: Ying_all64 rep B; time point 3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_450 and Pf6N2E2_451 are separated by 110 nucleotidesPf6N2E2_451 and Pf6N2E2_452 are separated by 211 nucleotidesPf6N2E2_452 and Pf6N2E2_453 are separated by 105 nucleotides Pf6N2E2_450 - FIG00953950: hypothetical protein, at 512,754 to 513,281 _450 Pf6N2E2_451 - transcriptional regulator MvaT, P16 subunit, putative, at 513,392 to 513,757 _451 Pf6N2E2_452 - Rtn protein, at 513,969 to 515,513 _452 Pf6N2E2_453 - LysR family transcriptional regulator STM2281, at 515,619 to 516,482 _453 Position (kb) 513 514 515 516Strain fitness (log2 ratio) -3 -2 -1 0 1at 513.125 kb on + strand, within Pf6N2E2_450at 513.125 kb on + strand, within Pf6N2E2_450at 513.151 kb on + strand, within Pf6N2E2_450at 513.151 kb on + strand, within Pf6N2E2_450at 513.151 kb on + strand, within Pf6N2E2_450at 513.151 kb on + strand, within Pf6N2E2_450at 513.151 kb on + strand, within Pf6N2E2_450at 513.151 kb on + strand, within Pf6N2E2_450at 513.151 kb on + strand, within Pf6N2E2_450at 513.151 kb on + strand, within Pf6N2E2_450at 513.152 kb on - strand, within Pf6N2E2_450at 513.152 kb on - strand, within Pf6N2E2_450at 513.152 kb on - strandat 513.152 kb on - strand, within Pf6N2E2_450at 513.152 kb on - strand, within Pf6N2E2_450at 513.152 kb on - strand, within Pf6N2E2_450at 513.152 kb on - strand, within Pf6N2E2_450at 513.178 kb on + strand, within Pf6N2E2_450at 513.179 kb on - strand, within Pf6N2E2_450at 513.179 kb on - strand, within Pf6N2E2_450at 513.195 kb on + strand, within Pf6N2E2_450at 513.195 kb on + strand, within Pf6N2E2_450at 513.195 kb on + strand, within Pf6N2E2_450at 513.195 kb on + strand, within Pf6N2E2_450at 513.195 kb on + strand, within Pf6N2E2_450at 513.195 kb on + strand, within Pf6N2E2_450at 513.196 kb on - strand, within Pf6N2E2_450at 513.196 kb on - strand, within Pf6N2E2_450at 513.196 kb on - strand, within Pf6N2E2_450at 513.196 kb on - strand, within Pf6N2E2_450at 513.196 kb on - strand, within Pf6N2E2_450at 513.196 kb on - strand, within Pf6N2E2_450at 513.196 kb on - strand, within Pf6N2E2_450at 513.196 kb on - strand, within Pf6N2E2_450at 513.208 kb on - strand, within Pf6N2E2_450at 513.208 kb on - strand, within Pf6N2E2_450at 513.250 kb on + strandat 513.251 kb on - strandat 513.278 kb on - strandat 513.296 kb on + strandat 513.430 kb on - strand, within Pf6N2E2_451at 513.430 kb on - strand, within Pf6N2E2_451at 513.516 kb on - strand, within Pf6N2E2_451at 513.779 kb on - strandat 513.779 kb on - strandat 513.811 kb on - strandat 513.811 kb on - strandat 513.846 kb on - strandat 513.859 kb on - strandat 513.873 kb on - strandat 513.873 kb on - strandat 513.914 kb on - strandat 513.932 kb on + strandat 513.955 kb on + strandat 513.980 kb on + strandat 514.032 kb on + strandat 514.032 kb on + strandat 514.032 kb on + strandat 514.032 kb on + strandat 514.033 kb on - strandat 514.036 kb on + strandat 514.037 kb on - strandat 514.045 kb on - strandat 514.240 kb on + strand, within Pf6N2E2_452at 514.240 kb on + strand, within Pf6N2E2_452at 514.241 kb on - strand, within Pf6N2E2_452at 514.335 kb on - strand, within Pf6N2E2_452at 514.335 kb on - strand, within Pf6N2E2_452at 514.383 kb on - strand, within Pf6N2E2_452at 514.549 kb on - strand, within Pf6N2E2_452at 514.668 kb on + strand, within Pf6N2E2_452at 514.685 kb on - strand, within Pf6N2E2_452at 514.685 kb on - strand, within Pf6N2E2_452at 514.685 kb on - strand, within Pf6N2E2_452at 514.831 kb on + strand, within Pf6N2E2_452at 514.831 kb on + strand, within Pf6N2E2_452at 514.866 kb on + strand, within Pf6N2E2_452at 514.866 kb on + strand, within Pf6N2E2_452at 514.867 kb on - strand, within Pf6N2E2_452at 514.867 kb on - strand, within Pf6N2E2_452at 515.194 kb on + strand, within Pf6N2E2_452at 515.195 kb on - strand, within Pf6N2E2_452at 515.195 kb on - strand, within Pf6N2E2_452at 515.195 kb on - strand, within Pf6N2E2_452at 515.195 kb on - strand, within Pf6N2E2_452at 515.195 kb on - strand, within Pf6N2E2_452at 515.195 kb on - strand, within Pf6N2E2_452at 515.213 kb on + strand, within Pf6N2E2_452at 515.214 kb on - strand, within Pf6N2E2_452at 515.214 kb on - strand, within Pf6N2E2_452at 515.214 kb on - strand, within Pf6N2E2_452at 515.214 kb on - strand, within Pf6N2E2_452at 515.304 kb on + strand, within Pf6N2E2_452at 515.304 kb on + strand, within Pf6N2E2_452at 515.304 kb on + strand, within Pf6N2E2_452at 515.304 kb on + strand, within Pf6N2E2_452at 515.304 kb on + strand, within Pf6N2E2_452at 515.304 kb on + strand, within Pf6N2E2_452at 515.304 kb on + strand, within Pf6N2E2_452at 515.304 kb on + strandat 515.305 kb on - strand, within Pf6N2E2_452at 515.305 kb on - strand, within Pf6N2E2_452at 515.305 kb on - strand, within Pf6N2E2_452at 515.305 kb on - strand, within Pf6N2E2_452at 515.305 kb on - strand, within Pf6N2E2_452at 515.305 kb on - strand, within Pf6N2E2_452at 515.305 kb on - strand, within Pf6N2E2_452at 515.305 kb on - strand, within Pf6N2E2_452at 515.413 kb on + strandat 515.413 kb on + strandat 515.414 kb on - strandat 515.442 kb on + strandat 515.569 kb on + strandat 515.569 kb on + strandat 515.569 kb on + strandat 515.569 kb on + strandat 515.569 kb on + strandat 515.569 kb on + strandat 515.570 kb on - strandat 515.570 kb on - strandat 515.972 kb on + strand, within Pf6N2E2_453at 515.973 kb on - strand, within Pf6N2E2_453at 516.017 kb on + strand, within Pf6N2E2_453at 516.508 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 3
remove
513,125 + Pf6N2E2_450 0.70 +0.2
513,125 + Pf6N2E2_450 0.70 +0.2
513,151 + Pf6N2E2_450 0.75 -0.8
513,151 + Pf6N2E2_450 0.75 -0.8
513,151 + Pf6N2E2_450 0.75 -1.9
513,151 + Pf6N2E2_450 0.75 -1.8
513,151 + Pf6N2E2_450 0.75 +0.2
513,151 + Pf6N2E2_450 0.75 -0.8
513,151 + Pf6N2E2_450 0.75 +0.2
513,151 + Pf6N2E2_450 0.75 -1.4
513,152 - Pf6N2E2_450 0.75 +0.2
513,152 - Pf6N2E2_450 0.75 +0.2
513,152 - -0.3
513,152 - Pf6N2E2_450 0.75 +0.2
513,152 - Pf6N2E2_450 0.75 -0.9
513,152 - Pf6N2E2_450 0.75 +0.2
513,152 - Pf6N2E2_450 0.75 -1.4
513,178 + Pf6N2E2_450 0.80 -0.8
513,179 - Pf6N2E2_450 0.80 +0.2
513,179 - Pf6N2E2_450 0.80 +0.2
513,195 + Pf6N2E2_450 0.84 +0.2
513,195 + Pf6N2E2_450 0.84 -0.3
513,195 + Pf6N2E2_450 0.84 -0.8
513,195 + Pf6N2E2_450 0.84 -0.8
513,195 + Pf6N2E2_450 0.84 -0.8
513,195 + Pf6N2E2_450 0.84 +0.2
513,196 - Pf6N2E2_450 0.84 -1.1
513,196 - Pf6N2E2_450 0.84 -0.8
513,196 - Pf6N2E2_450 0.84 +0.2
513,196 - Pf6N2E2_450 0.84 -0.8
513,196 - Pf6N2E2_450 0.84 -0.8
513,196 - Pf6N2E2_450 0.84 -0.8
513,196 - Pf6N2E2_450 0.84 -0.8
513,196 - Pf6N2E2_450 0.84 +0.2
513,208 - Pf6N2E2_450 0.86 +0.2
513,208 - Pf6N2E2_450 0.86 +0.2
513,250 + +0.2
513,251 - -2.8
513,278 - -1.4
513,296 + +0.2
513,430 - Pf6N2E2_451 0.10 -0.8
513,430 - Pf6N2E2_451 0.10 +0.2
513,516 - Pf6N2E2_451 0.34 -0.8
513,779 - +1.2
513,779 - -0.8
513,811 - +0.2
513,811 - -1.2
513,846 - +0.2
513,859 - -1.4
513,873 - +0.2
513,873 - +0.2
513,914 - -0.5
513,932 + +0.2
513,955 + +0.2
513,980 + +0.2
514,032 + +0.2
514,032 + -1.1
514,032 + +0.2
514,032 + +1.2
514,033 - -0.8
514,036 + +0.2
514,037 - +0.2
514,045 - -0.6
514,240 + Pf6N2E2_452 0.18 +0.2
514,240 + Pf6N2E2_452 0.18 +0.2
514,241 - Pf6N2E2_452 0.18 -1.5
514,335 - Pf6N2E2_452 0.24 -1.4
514,335 - Pf6N2E2_452 0.24 -0.8
514,383 - Pf6N2E2_452 0.27 +0.2
514,549 - Pf6N2E2_452 0.38 +0.2
514,668 + Pf6N2E2_452 0.45 +0.0
514,685 - Pf6N2E2_452 0.46 +0.2
514,685 - Pf6N2E2_452 0.46 +0.2
514,685 - Pf6N2E2_452 0.46 +0.2
514,831 + Pf6N2E2_452 0.56 +0.2
514,831 + Pf6N2E2_452 0.56 +0.2
514,866 + Pf6N2E2_452 0.58 +0.2
514,866 + Pf6N2E2_452 0.58 -0.6
514,867 - Pf6N2E2_452 0.58 +0.2
514,867 - Pf6N2E2_452 0.58 +0.2
515,194 + Pf6N2E2_452 0.79 -0.4
515,195 - Pf6N2E2_452 0.79 -1.6
515,195 - Pf6N2E2_452 0.79 +0.2
515,195 - Pf6N2E2_452 0.79 +0.2
515,195 - Pf6N2E2_452 0.79 -0.2
515,195 - Pf6N2E2_452 0.79 -1.4
515,195 - Pf6N2E2_452 0.79 +0.2
515,213 + Pf6N2E2_452 0.81 -1.4
515,214 - Pf6N2E2_452 0.81 -0.6
515,214 - Pf6N2E2_452 0.81 +0.2
515,214 - Pf6N2E2_452 0.81 +0.2
515,214 - Pf6N2E2_452 0.81 +0.2
515,304 + Pf6N2E2_452 0.86 -0.9
515,304 + Pf6N2E2_452 0.86 -0.4
515,304 + Pf6N2E2_452 0.86 +0.2
515,304 + Pf6N2E2_452 0.86 +0.2
515,304 + Pf6N2E2_452 0.86 -0.6
515,304 + Pf6N2E2_452 0.86 -0.8
515,304 + Pf6N2E2_452 0.86 +0.2
515,304 + +0.2
515,305 - Pf6N2E2_452 0.86 -1.4
515,305 - Pf6N2E2_452 0.86 +1.0
515,305 - Pf6N2E2_452 0.86 +0.2
515,305 - Pf6N2E2_452 0.86 +0.2
515,305 - Pf6N2E2_452 0.86 +0.2
515,305 - Pf6N2E2_452 0.86 -0.5
515,305 - Pf6N2E2_452 0.86 +0.2
515,305 - Pf6N2E2_452 0.86 -0.8
515,413 + +0.2
515,413 + -0.4
515,414 - -0.8
515,442 + +0.2
515,569 + -0.8
515,569 + +0.2
515,569 + +0.2
515,569 + -0.8
515,569 + +0.2
515,569 + -1.4
515,570 - -0.8
515,570 - +0.2
515,972 + Pf6N2E2_453 0.41 -0.8
515,973 - Pf6N2E2_453 0.41 -1.8
516,017 + Pf6N2E2_453 0.46 +0.2
516,508 + -0.5

Or see this region's nucleotide sequence