Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3440

Experiment: Ying_all64 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 3
4,008,535	+		Pf6N2E2_3439	0.43	-0.6
4,008,536	-		Pf6N2E2_3439	0.43	-0.6
4,008,647	+		Pf6N2E2_3439	0.50	-0.5
4,008,648	-		Pf6N2E2_3439	0.51	+0.4
4,008,739	+		Pf6N2E2_3439	0.57	+0.4
4,008,739	+		Pf6N2E2_3439	0.57	-0.1
4,008,739	+		Pf6N2E2_3439	0.57	+0.4
4,008,814	+		Pf6N2E2_3439	0.62	+0.4
4,008,814	+		Pf6N2E2_3439	0.62	-0.6
4,009,274	+				+0.4
4,009,369	+				+1.4
4,009,369	+				+0.4
4,009,370	-				+0.4
4,009,541	+		Pf6N2E2_3440	0.19	-0.6
4,009,541	+		Pf6N2E2_3440	0.19	-0.4
4,009,541	+		Pf6N2E2_3440	0.19	-2.2
4,009,542	-		Pf6N2E2_3440	0.19	-1.2
4,009,542	-		Pf6N2E2_3440	0.19	+0.4
4,009,641	-		Pf6N2E2_3440	0.31	-1.9
4,009,793	-		Pf6N2E2_3440	0.48	-1.1
4,009,793	-		Pf6N2E2_3440	0.48	+0.4
4,009,962	-		Pf6N2E2_3440	0.68	-0.6
4,010,152	+		Pf6N2E2_3440	0.90	+0.4
4,010,226	-				-1.0
4,010,248	+				-1.2
4,010,248	+				-0.6
4,010,249	-				-0.6
4,010,249	-				+0.4
4,010,364	+				+0.4
4,010,365	-				+0.4
4,010,372	+				-0.6
4,010,372	+				-0.4
4,010,674	+		Pf6N2E2_3441	0.30	-1.2
4,010,675	-		Pf6N2E2_3441	0.30	-1.2
4,010,675	-		Pf6N2E2_3441	0.30	+0.4
4,010,675	-		Pf6N2E2_3441	0.30	+0.4
4,011,017	+		Pf6N2E2_3441	0.56	+0.4
4,011,065	+		Pf6N2E2_3441	0.59	-0.6
4,011,065	+		Pf6N2E2_3441	0.59	-1.8