Experiment: Ying_all64 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_330 and Pf6N2E2_331 are separated by 265 nucleotides Pf6N2E2_331 and Pf6N2E2_332 are separated by 23 nucleotides Pf6N2E2_332 and Pf6N2E2_333 are separated by 17 nucleotides
Pf6N2E2_330 - Mesenchymal stem cell protein DSCD75, at 398,698 to 399,249
_330
Pf6N2E2_331 - Putative translation initiation inhibitor, yjgF family, at 399,515 to 399,946
_331
Pf6N2E2_332 - putative nucleoside-diphosphate-sugar epimerase, at 399,970 to 400,848
_332
Pf6N2E2_333 - hypothetical protein, at 400,866 to 401,549
_333
Position (kb) 399
400 Strain fitness (log2 ratio) -2
-1
0
1
2 at 398.516 kb on + strand at 398.516 kb on + strand at 398.516 kb on + strand at 398.516 kb on + strand at 398.516 kb on + strand at 398.517 kb on - strand at 398.517 kb on - strand at 398.517 kb on - strand at 398.518 kb on + strand at 398.519 kb on - strand at 398.623 kb on + strand at 398.683 kb on + strand at 398.683 kb on + strand at 398.683 kb on + strand at 398.683 kb on + strand at 398.684 kb on - strand at 398.684 kb on - strand at 399.074 kb on + strand, within Pf6N2E2_330 at 399.074 kb on + strand, within Pf6N2E2_330 at 399.075 kb on - strand, within Pf6N2E2_330 at 399.107 kb on + strand, within Pf6N2E2_330 at 399.108 kb on - strand, within Pf6N2E2_330 at 399.108 kb on - strand, within Pf6N2E2_330 at 399.283 kb on + strand at 399.284 kb on - strand at 399.307 kb on - strand at 399.392 kb on + strand at 399.494 kb on - strand at 399.624 kb on + strand, within Pf6N2E2_331 at 399.624 kb on + strand, within Pf6N2E2_331 at 399.666 kb on + strand, within Pf6N2E2_331 at 399.666 kb on + strand, within Pf6N2E2_331 at 399.666 kb on + strand, within Pf6N2E2_331 at 399.938 kb on - strand at 400.016 kb on + strand at 400.016 kb on + strand at 400.016 kb on + strand at 400.016 kb on + strand at 400.016 kb on + strand at 400.017 kb on - strand at 400.017 kb on - strand at 400.017 kb on - strand at 400.017 kb on - strand at 400.017 kb on - strand at 400.075 kb on + strand, within Pf6N2E2_332 at 400.232 kb on + strand, within Pf6N2E2_332 at 400.415 kb on + strand, within Pf6N2E2_332 at 400.416 kb on - strand, within Pf6N2E2_332 at 400.416 kb on - strand, within Pf6N2E2_332 at 400.416 kb on - strand, within Pf6N2E2_332 at 400.416 kb on - strand, within Pf6N2E2_332 at 400.416 kb on - strand, within Pf6N2E2_332 at 400.416 kb on - strand, within Pf6N2E2_332 at 400.419 kb on - strand, within Pf6N2E2_332 at 400.501 kb on - strand, within Pf6N2E2_332 at 400.844 kb on + strand at 400.844 kb on + strand at 400.844 kb on + strand at 400.844 kb on + strand at 400.844 kb on + strand at 400.845 kb on - strand at 400.845 kb on - strand at 400.845 kb on - strand at 400.845 kb on - strand at 400.845 kb on - strand at 400.854 kb on + strand at 400.854 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 3 remove 398,516 + +0.2 398,516 + -0.8 398,516 + -0.8 398,516 + -0.8 398,516 + -0.8 398,517 - +0.2 398,517 - +0.2 398,517 - +0.2 398,518 + +0.2 398,519 - +0.8 398,623 + -0.4 398,683 + -0.8 398,683 + +0.2 398,683 + -0.8 398,683 + -0.7 398,684 - +0.2 398,684 - -0.6 399,074 + Pf6N2E2_330 0.68 -1.4 399,074 + Pf6N2E2_330 0.68 +0.2 399,075 - Pf6N2E2_330 0.68 -0.4 399,107 + Pf6N2E2_330 0.74 -0.6 399,108 - Pf6N2E2_330 0.74 -0.6 399,108 - Pf6N2E2_330 0.74 +0.2 399,283 + -0.7 399,284 - -0.8 399,307 - +0.2 399,392 + +0.3 399,494 - +0.2 399,624 + Pf6N2E2_331 0.25 +1.8 399,624 + Pf6N2E2_331 0.25 -0.8 399,666 + Pf6N2E2_331 0.35 +0.7 399,666 + Pf6N2E2_331 0.35 +0.0 399,666 + Pf6N2E2_331 0.35 +0.2 399,938 - +0.2 400,016 + -0.9 400,016 + +0.2 400,016 + -0.6 400,016 + +0.2 400,016 + -1.8 400,017 - +0.2 400,017 - -0.4 400,017 - -0.4 400,017 - +0.2 400,017 - +0.2 400,075 + Pf6N2E2_332 0.12 +0.2 400,232 + Pf6N2E2_332 0.30 -0.4 400,415 + Pf6N2E2_332 0.51 +0.2 400,416 - Pf6N2E2_332 0.51 -1.4 400,416 - Pf6N2E2_332 0.51 +0.2 400,416 - Pf6N2E2_332 0.51 +0.2 400,416 - Pf6N2E2_332 0.51 +0.2 400,416 - Pf6N2E2_332 0.51 +0.2 400,416 - Pf6N2E2_332 0.51 -0.4 400,419 - Pf6N2E2_332 0.51 -0.0 400,501 - Pf6N2E2_332 0.60 +0.2 400,844 + -0.7 400,844 + -0.8 400,844 + +0.2 400,844 + +0.8 400,844 + -0.4 400,845 - +0.2 400,845 - -0.2 400,845 - -0.8 400,845 - -0.8 400,845 - -1.8 400,854 + -0.8 400,854 + -1.4
Or see this region's nucleotide sequence