Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2995

Experiment: Ying_all64 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 3
3,485,816	+		Pf6N2E2_2993	0.80	-1.2
3,485,953	-				+0.3
3,486,041	-				-0.6
3,486,041	-				+0.3
3,486,041	-				+1.3
3,486,041	-				-0.7
3,486,041	-				-0.7
3,486,131	+				-0.2
3,486,131	+				-0.7
3,486,302	+		Pf6N2E2_2994	0.38	+0.3
3,486,303	-		Pf6N2E2_2994	0.39	+0.1
3,486,340	+		Pf6N2E2_2994	0.46	+0.2
3,486,340	+		Pf6N2E2_2994	0.46	-0.6
3,486,450	+		Pf6N2E2_2994	0.68	-0.7
3,486,450	+		Pf6N2E2_2994	0.68	-0.7
3,486,450	+		Pf6N2E2_2994	0.68	-1.2
3,486,450	+		Pf6N2E2_2994	0.68	-0.7
3,486,450	+		Pf6N2E2_2994	0.68	-0.7
3,486,450	+		Pf6N2E2_2994	0.68	+0.3
3,486,451	-		Pf6N2E2_2994	0.68	-0.7
3,486,451	-		Pf6N2E2_2994	0.68	+0.3
3,486,459	+		Pf6N2E2_2994	0.70	+0.3
3,486,460	-		Pf6N2E2_2994	0.70	+0.3
3,486,460	-		Pf6N2E2_2994	0.70	-0.7
3,486,460	-		Pf6N2E2_2994	0.70	-1.2
3,486,460	-		Pf6N2E2_2994	0.70	+0.3
3,486,460	-		Pf6N2E2_2994	0.70	-0.7
3,486,643	-				+0.3
3,486,647	+				+0.3
3,486,647	+				-0.7
3,486,648	-				+0.3
3,486,648	-				-0.4
3,486,702	+				+0.3
3,486,702	+				+0.3
3,486,702	+				+0.3
3,486,702	+				+0.3
3,486,704	+				-0.9
3,486,704	+				-0.7
3,486,704	+				+0.3
3,486,704	+				-0.7
3,486,704	+				-0.7
3,486,705	-				+0.3
3,486,705	-				+0.3
3,486,705	-				-0.9
3,486,705	-				-0.5
3,486,705	-				-0.7
3,486,705	-				-0.6
3,486,903	+		Pf6N2E2_2995	0.41	+0.3
3,486,903	+		Pf6N2E2_2995	0.41	-1.2
3,486,904	-		Pf6N2E2_2995	0.41	+0.3
3,486,904	-		Pf6N2E2_2995	0.41	+0.3
3,486,933	+		Pf6N2E2_2995	0.47	-0.7
3,486,933	+		Pf6N2E2_2995	0.47	-1.2
3,486,933	+		Pf6N2E2_2995	0.47	-1.7
3,486,934	-		Pf6N2E2_2995	0.47	-0.7
3,487,219	-				+0.4
3,487,280	+		Pf6N2E2_2996	0.14	+0.4
3,487,436	+		Pf6N2E2_2996	0.42	-0.6
3,487,436	+		Pf6N2E2_2996	0.42	+0.4
3,487,436	+		Pf6N2E2_2996	0.42	-0.5
3,487,436	+		Pf6N2E2_2996	0.42	+0.4
3,487,437	-		Pf6N2E2_2996	0.42	-0.7
3,487,437	-		Pf6N2E2_2996	0.42	-0.6
3,487,447	+		Pf6N2E2_2996	0.44	-1.9
3,487,448	-		Pf6N2E2_2996	0.44	-1.6
3,487,448	-		Pf6N2E2_2996	0.44	+0.4
3,487,448	-		Pf6N2E2_2996	0.44	-0.7
3,487,490	-		Pf6N2E2_2996	0.51	+0.4
3,487,555	+		Pf6N2E2_2996	0.63	-1.5
3,487,555	+		Pf6N2E2_2996	0.63	+0.4
3,487,555	+		Pf6N2E2_2996	0.63	+0.4
3,487,555	+		Pf6N2E2_2996	0.63	-0.6
3,487,556	-		Pf6N2E2_2996	0.63	+0.4
3,487,556	-		Pf6N2E2_2996	0.63	+0.4
3,487,556	-		Pf6N2E2_2996	0.63	+0.4
3,487,567	+		Pf6N2E2_2996	0.65	-1.8
3,487,567	+		Pf6N2E2_2996	0.65	+0.4
3,487,594	+		Pf6N2E2_2996	0.70	-0.6
3,487,595	-		Pf6N2E2_2996	0.70	+0.4
3,487,739	+				+0.4
3,487,739	+				+0.4
3,487,740	-				+0.4
3,487,740	-				-0.2
3,487,740	-				+0.4
3,487,755	-				-1.6
3,487,763	+				-0.6
3,487,764	-				+0.4
3,487,833	-				-0.3
3,487,883	-				+0.3
3,487,900	+				-0.7
3,487,900	+				+0.3
3,487,901	-				+0.3
3,487,901	-				-1.2
3,487,901	-				+0.3
3,487,901	-				-1.2
3,487,901	-				-0.7
3,487,901	-				+0.3
3,487,901	-				-1.2
3,487,901	-				+0.3
3,487,901	-				+0.3
3,488,014	+				-0.7
3,488,014	+				+0.3
3,488,014	+				+0.3
3,488,015	-				-0.7
3,488,015	-				+0.3
3,488,019	-				-0.2
3,488,019	-				-0.7
3,488,019	-				-0.4
3,488,083	-		Pf6N2E2_2997	0.17	+0.3
3,488,100	+		Pf6N2E2_2997	0.21	+0.3
3,488,102	+		Pf6N2E2_2997	0.22	+0.1
3,488,102	+		Pf6N2E2_2997	0.22	+0.3
3,488,102	+		Pf6N2E2_2997	0.22	+0.3
3,488,102	+		Pf6N2E2_2997	0.22	+0.3
3,488,103	-		Pf6N2E2_2997	0.22	+1.2
3,488,103	-		Pf6N2E2_2997	0.22	-0.7
3,488,103	-		Pf6N2E2_2997	0.22	-2.2
3,488,166	-		Pf6N2E2_2997	0.38	-0.7
3,488,166	-		Pf6N2E2_2997	0.38	-0.7
3,488,179	+		Pf6N2E2_2997	0.42	+0.3
3,488,182	-		Pf6N2E2_2997	0.42	-0.7
3,488,182	-		Pf6N2E2_2997	0.42	+0.3
3,488,182	-		Pf6N2E2_2997	0.42	+0.3