Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_94

Experiment: Ying_all64 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 3
138,679	-				-0.7
138,722	+				-0.4
138,722	+				-1.1
138,722	+				+0.3
138,722	+				+0.3
138,722	+				+0.3
138,722	+				-0.7
138,722	+				-0.4
138,722	+				+0.5
138,722	+				-1.0
138,722	+				+0.3
138,723	-				+0.3
138,723	-				+0.3
138,734	+				+0.3
138,734	+				+0.3
138,735	-				+0.3
138,847	+				+0.3
138,847	+				-0.7
138,847	+				-0.7
139,008	+		Pf6N2E2_93	0.14	-0.7
139,008	+		Pf6N2E2_93	0.14	-0.7
139,009	-		Pf6N2E2_93	0.14	+0.3
139,011	+		Pf6N2E2_93	0.14	+0.3
139,012	-		Pf6N2E2_93	0.14	-0.7
139,012	-		Pf6N2E2_93	0.14	+0.3
139,017	+		Pf6N2E2_93	0.16	-0.7
139,017	+		Pf6N2E2_93	0.16	+0.3
139,017	+		Pf6N2E2_93	0.16	-0.7
139,017	+		Pf6N2E2_93	0.16	+0.3
139,017	+		Pf6N2E2_93	0.16	+0.3
139,018	-		Pf6N2E2_93	0.16	-0.8
139,018	-		Pf6N2E2_93	0.16	+0.3
139,018	-		Pf6N2E2_93	0.16	-0.7
139,035	+		Pf6N2E2_93	0.20	-0.7
139,035	+		Pf6N2E2_93	0.20	-1.2
139,035	+		Pf6N2E2_93	0.20	+0.3
139,036	-		Pf6N2E2_93	0.20	+0.3
139,036	-		Pf6N2E2_93	0.20	-0.7
139,036	-		Pf6N2E2_93	0.20	-1.1
139,036	-		Pf6N2E2_93	0.20	+0.3
139,036	-		Pf6N2E2_93	0.20	-1.2
139,036	-		Pf6N2E2_93	0.20	+0.3
139,036	-		Pf6N2E2_93	0.20	-0.7
139,036	-		Pf6N2E2_93	0.20	-0.7
139,036	-		Pf6N2E2_93	0.20	-1.1
139,067	-		Pf6N2E2_93	0.27	+0.3
139,067	-		Pf6N2E2_93	0.27	+0.3
139,188	+		Pf6N2E2_93	0.55	-1.2
139,189	-		Pf6N2E2_93	0.56	-0.1
139,193	-		Pf6N2E2_93	0.57	+0.3
139,193	-		Pf6N2E2_93	0.57	+0.3
139,274	-		Pf6N2E2_93	0.76	-1.2
139,276	-		Pf6N2E2_93	0.76	-0.7
139,341	+				+0.3
139,342	-				-0.7
139,342	-				-0.4
139,342	-				+0.3
139,346	-				-0.7
139,358	+				+0.3
139,358	+				+0.3
139,358	+				+0.3
139,359	-				-0.7
139,503	-				-0.7
139,503	-				-1.3
139,587	-				-1.4
139,659	+				+0.3
139,659	+				+0.3
139,660	-				+0.3
139,797	-		Pf6N2E2_94	0.14	-1.7
139,797	-		Pf6N2E2_94	0.14	-1.2
140,071	-		Pf6N2E2_94	0.43	+0.3
140,085	+		Pf6N2E2_94	0.45	-0.7
140,086	-		Pf6N2E2_94	0.45	-1.0
140,086	-		Pf6N2E2_94	0.45	-1.7
140,100	+		Pf6N2E2_94	0.47	+0.3
140,100	+		Pf6N2E2_94	0.47	-0.7
140,101	-		Pf6N2E2_94	0.47	+0.3
140,575	+				+0.3
140,575	+				-0.4
140,575	+				+0.3
140,614	+				+0.3
140,615	-				-0.7
140,615	-				+0.3
140,615	-				+0.3
140,675	+				-2.8
140,675	+				-0.9
140,676	-				+0.3
140,676	-				-1.2
140,676	-				+0.3
140,676	-				-1.2
140,676	-				+0.3
140,679	+				+0.3
140,680	-				-0.7
140,680	-				-0.7
140,696	+				+0.3
140,696	+				+0.3
140,696	+				+0.3
140,696	+				+0.3
140,697	-				+0.3
140,697	-				+0.3
140,697	-				-0.1
140,697	-				+0.3
140,809	+		Pf6N2E2_95	0.10	+0.3
140,810	-				+0.3
141,033	+		Pf6N2E2_95	0.31	+0.3
141,148	+		Pf6N2E2_95	0.42	-0.5
141,148	+		Pf6N2E2_95	0.42	+0.3
141,149	-		Pf6N2E2_95	0.42	-1.2
141,149	-		Pf6N2E2_95	0.42	+0.3
141,149	-		Pf6N2E2_95	0.42	-0.7
141,149	-		Pf6N2E2_95	0.42	+0.3
141,149	-		Pf6N2E2_95	0.42	-0.7
141,149	-		Pf6N2E2_95	0.42	-0.4
141,292	-		Pf6N2E2_95	0.55	-0.3
141,507	+		Pf6N2E2_95	0.75	-1.2
141,507	+		Pf6N2E2_95	0.75	+1.3