Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_806

Experiment: Ying_all64 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_805 and Pf6N2E2_806 are separated by 206 nucleotidesPf6N2E2_806 and Pf6N2E2_807 are separated by 15 nucleotides Pf6N2E2_805 - Xylulose kinase (EC 2.7.1.17) (from data), at 935,988 to 937,475 _805 Pf6N2E2_806 - Multiple polyol-specific dehydrogenase (EC 1.1.1.-), at 937,682 to 939,163 _806 Pf6N2E2_807 - Various polyols ABC transporter, ATP-binding component, at 939,179 to 940,282 _807 Position (kb) 937 938 939 940Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 936.876 kb on + strand, within Pf6N2E2_805at 936.876 kb on + strand, within Pf6N2E2_805at 936.876 kb on + strand, within Pf6N2E2_805at 936.906 kb on + strand, within Pf6N2E2_805at 936.906 kb on + strand, within Pf6N2E2_805at 936.906 kb on + strand, within Pf6N2E2_805at 936.906 kb on + strand, within Pf6N2E2_805at 936.907 kb on - strand, within Pf6N2E2_805at 936.907 kb on - strand, within Pf6N2E2_805at 936.907 kb on - strand, within Pf6N2E2_805at 936.907 kb on - strand, within Pf6N2E2_805at 936.970 kb on + strand, within Pf6N2E2_805at 936.970 kb on + strand, within Pf6N2E2_805at 936.970 kb on + strand, within Pf6N2E2_805at 936.970 kb on + strand, within Pf6N2E2_805at 936.970 kb on + strand, within Pf6N2E2_805at 936.970 kb on + strand, within Pf6N2E2_805at 936.971 kb on - strand, within Pf6N2E2_805at 937.018 kb on - strand, within Pf6N2E2_805at 937.536 kb on + strandat 937.536 kb on + strandat 937.536 kb on + strandat 937.536 kb on + strandat 937.537 kb on - strandat 937.537 kb on - strandat 937.537 kb on - strandat 937.602 kb on - strandat 937.602 kb on - strandat 937.894 kb on - strand, within Pf6N2E2_806at 937.894 kb on - strand, within Pf6N2E2_806at 937.894 kb on - strand, within Pf6N2E2_806at 937.894 kb on - strand, within Pf6N2E2_806at 937.926 kb on + strand, within Pf6N2E2_806at 937.926 kb on + strand, within Pf6N2E2_806at 937.927 kb on - strand, within Pf6N2E2_806at 937.927 kb on - strand, within Pf6N2E2_806at 937.927 kb on - strand, within Pf6N2E2_806at 937.929 kb on - strand, within Pf6N2E2_806at 938.103 kb on + strand, within Pf6N2E2_806at 938.163 kb on + strand, within Pf6N2E2_806at 938.163 kb on + strand, within Pf6N2E2_806at 938.163 kb on + strand, within Pf6N2E2_806at 938.164 kb on - strand, within Pf6N2E2_806at 938.164 kb on - strand, within Pf6N2E2_806at 938.164 kb on - strand, within Pf6N2E2_806at 938.164 kb on - strand, within Pf6N2E2_806at 938.164 kb on - strand, within Pf6N2E2_806at 938.175 kb on + strand, within Pf6N2E2_806at 938.175 kb on + strand, within Pf6N2E2_806at 938.175 kb on + strand, within Pf6N2E2_806at 938.176 kb on - strand, within Pf6N2E2_806at 938.293 kb on - strand, within Pf6N2E2_806at 938.293 kb on - strand, within Pf6N2E2_806at 938.907 kb on + strand, within Pf6N2E2_806at 938.922 kb on + strand, within Pf6N2E2_806at 938.923 kb on - strand, within Pf6N2E2_806at 939.030 kb on + strandat 939.030 kb on + strandat 939.030 kb on + strandat 939.031 kb on - strandat 939.031 kb on - strandat 939.033 kb on + strandat 939.034 kb on - strandat 939.119 kb on + strandat 939.119 kb on + strandat 939.119 kb on + strandat 939.177 kb on - strandat 939.230 kb on + strandat 939.230 kb on + strandat 939.231 kb on - strandat 939.619 kb on - strand, within Pf6N2E2_807at 939.717 kb on + strand, within Pf6N2E2_807at 939.717 kb on + strand, within Pf6N2E2_807at 939.717 kb on + strand, within Pf6N2E2_807at 939.717 kb on + strand, within Pf6N2E2_807at 939.717 kb on + strand, within Pf6N2E2_807at 939.717 kb on + strand, within Pf6N2E2_807at 939.717 kb on + strand, within Pf6N2E2_807at 939.718 kb on - strand, within Pf6N2E2_807at 939.718 kb on - strand, within Pf6N2E2_807at 939.718 kb on - strand, within Pf6N2E2_807at 939.718 kb on - strand, within Pf6N2E2_807at 939.718 kb on - strand, within Pf6N2E2_807at 939.718 kb on - strand, within Pf6N2E2_807at 939.718 kb on - strand, within Pf6N2E2_807at 939.718 kb on - strand, within Pf6N2E2_807at 939.718 kb on - strand, within Pf6N2E2_807at 939.858 kb on - strand, within Pf6N2E2_807at 940.023 kb on + strand, within Pf6N2E2_807at 940.024 kb on - strand, within Pf6N2E2_807at 940.032 kb on + strand, within Pf6N2E2_807at 940.032 kb on + strand, within Pf6N2E2_807at 940.032 kb on + strand, within Pf6N2E2_807at 940.032 kb on + strand, within Pf6N2E2_807at 940.032 kb on + strand, within Pf6N2E2_807at 940.032 kb on + strand, within Pf6N2E2_807at 940.033 kb on - strand, within Pf6N2E2_807at 940.033 kb on - strand, within Pf6N2E2_807at 940.033 kb on - strand, within Pf6N2E2_807

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3
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936,876 + Pf6N2E2_805 0.60 +0.2
936,876 + Pf6N2E2_805 0.60 +0.2
936,876 + Pf6N2E2_805 0.60 +0.2
936,906 + Pf6N2E2_805 0.62 -3.3
936,906 + Pf6N2E2_805 0.62 -0.8
936,906 + Pf6N2E2_805 0.62 +0.2
936,906 + Pf6N2E2_805 0.62 +0.2
936,907 - Pf6N2E2_805 0.62 -0.9
936,907 - Pf6N2E2_805 0.62 +0.2
936,907 - Pf6N2E2_805 0.62 -0.9
936,907 - Pf6N2E2_805 0.62 -1.4
936,970 + Pf6N2E2_805 0.66 +0.2
936,970 + Pf6N2E2_805 0.66 +1.2
936,970 + Pf6N2E2_805 0.66 -0.8
936,970 + Pf6N2E2_805 0.66 -0.8
936,970 + Pf6N2E2_805 0.66 -0.8
936,970 + Pf6N2E2_805 0.66 -0.8
936,971 - Pf6N2E2_805 0.66 -2.7
937,018 - Pf6N2E2_805 0.69 +0.2
937,536 + +0.2
937,536 + +0.2
937,536 + +0.8
937,536 + +0.2
937,537 - -0.3
937,537 - -1.4
937,537 - +0.2
937,602 - +0.2
937,602 - -0.8
937,894 - Pf6N2E2_806 0.14 +0.2
937,894 - Pf6N2E2_806 0.14 -6.2
937,894 - Pf6N2E2_806 0.14 +0.2
937,894 - Pf6N2E2_806 0.14 +0.2
937,926 + Pf6N2E2_806 0.16 -0.8
937,926 + Pf6N2E2_806 0.16 -7.7
937,927 - Pf6N2E2_806 0.17 +0.2
937,927 - Pf6N2E2_806 0.17 -6.5
937,927 - Pf6N2E2_806 0.17 +0.2
937,929 - Pf6N2E2_806 0.17 -1.8
938,103 + Pf6N2E2_806 0.28 +0.2
938,163 + Pf6N2E2_806 0.32 +0.2
938,163 + Pf6N2E2_806 0.32 +0.2
938,163 + Pf6N2E2_806 0.32 -2.6
938,164 - Pf6N2E2_806 0.33 +0.2
938,164 - Pf6N2E2_806 0.33 -0.8
938,164 - Pf6N2E2_806 0.33 -1.3
938,164 - Pf6N2E2_806 0.33 +0.2
938,164 - Pf6N2E2_806 0.33 +0.2
938,175 + Pf6N2E2_806 0.33 +0.2
938,175 + Pf6N2E2_806 0.33 -0.8
938,175 + Pf6N2E2_806 0.33 -1.4
938,176 - Pf6N2E2_806 0.33 +0.2
938,293 - Pf6N2E2_806 0.41 +0.2
938,293 - Pf6N2E2_806 0.41 -0.8
938,907 + Pf6N2E2_806 0.83 -0.8
938,922 + Pf6N2E2_806 0.84 +0.2
938,923 - Pf6N2E2_806 0.84 -1.8
939,030 + -3.8
939,030 + -3.6
939,030 + -1.4
939,031 - +0.2
939,031 - -0.8
939,033 + -0.8
939,034 - +0.2
939,119 + +0.2
939,119 + -3.2
939,119 + -1.4
939,177 - -0.8
939,230 + -0.8
939,230 + +0.2
939,231 - +0.2
939,619 - Pf6N2E2_807 0.40 +0.8
939,717 + Pf6N2E2_807 0.49 -1.4
939,717 + Pf6N2E2_807 0.49 -0.8
939,717 + Pf6N2E2_807 0.49 -1.4
939,717 + Pf6N2E2_807 0.49 -0.8
939,717 + Pf6N2E2_807 0.49 +0.2
939,717 + Pf6N2E2_807 0.49 +0.2
939,717 + Pf6N2E2_807 0.49 -2.1
939,718 - Pf6N2E2_807 0.49 -0.9
939,718 - Pf6N2E2_807 0.49 -0.8
939,718 - Pf6N2E2_807 0.49 +0.2
939,718 - Pf6N2E2_807 0.49 +0.2
939,718 - Pf6N2E2_807 0.49 -1.4
939,718 - Pf6N2E2_807 0.49 -0.4
939,718 - Pf6N2E2_807 0.49 +0.2
939,718 - Pf6N2E2_807 0.49 +0.2
939,718 - Pf6N2E2_807 0.49 +0.2
939,858 - Pf6N2E2_807 0.62 -0.8
940,023 + Pf6N2E2_807 0.76 -1.8
940,024 - Pf6N2E2_807 0.77 +0.2
940,032 + Pf6N2E2_807 0.77 -2.4
940,032 + Pf6N2E2_807 0.77 -0.9
940,032 + Pf6N2E2_807 0.77 +0.2
940,032 + Pf6N2E2_807 0.77 +0.2
940,032 + Pf6N2E2_807 0.77 -0.8
940,032 + Pf6N2E2_807 0.77 +0.2
940,033 - Pf6N2E2_807 0.77 -0.5
940,033 - Pf6N2E2_807 0.77 +0.2
940,033 - Pf6N2E2_807 0.77 -0.7

Or see this region's nucleotide sequence