Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_496 and Pf6N2E2_497 are separated by 0 nucleotides Pf6N2E2_497 and Pf6N2E2_498 are separated by 183 nucleotides
Pf6N2E2_496 - Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) <small>(from data)</small>, at 562,747 to 564,021
_496
Pf6N2E2_497 - Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism, at 564,022 to 565,389
_497
Pf6N2E2_498 - Dihydropyrimidinase (EC 3.5.2.2) <small>(from data)</small>, at 565,573 to 567,012
_498
Position (kb) 564
565
566 Strain fitness (log2 ratio) -2
-1
0
1 at 563.022 kb on - strand, within Pf6N2E2_496 at 563.022 kb on - strand, within Pf6N2E2_496 at 563.022 kb on - strand, within Pf6N2E2_496 at 563.036 kb on + strand, within Pf6N2E2_496 at 563.036 kb on + strand, within Pf6N2E2_496 at 563.036 kb on + strand, within Pf6N2E2_496 at 563.522 kb on + strand, within Pf6N2E2_496 at 563.522 kb on + strand, within Pf6N2E2_496 at 563.523 kb on - strand, within Pf6N2E2_496 at 563.523 kb on - strand, within Pf6N2E2_496 at 563.523 kb on - strand, within Pf6N2E2_496 at 563.523 kb on - strand, within Pf6N2E2_496 at 563.523 kb on - strand, within Pf6N2E2_496 at 563.523 kb on - strand, within Pf6N2E2_496 at 563.555 kb on + strand, within Pf6N2E2_496 at 563.555 kb on + strand, within Pf6N2E2_496 at 563.556 kb on - strand, within Pf6N2E2_496 at 563.556 kb on - strand, within Pf6N2E2_496 at 563.843 kb on + strand, within Pf6N2E2_496 at 563.936 kb on + strand at 563.937 kb on - strand at 563.937 kb on - strand at 563.937 kb on - strand at 563.937 kb on - strand at 563.937 kb on - strand at 564.024 kb on - strand at 564.141 kb on - strand at 564.141 kb on - strand at 564.617 kb on + strand, within Pf6N2E2_497 at 564.617 kb on + strand, within Pf6N2E2_497 at 564.815 kb on + strand, within Pf6N2E2_497 at 564.815 kb on + strand, within Pf6N2E2_497 at 564.833 kb on + strand, within Pf6N2E2_497 at 564.834 kb on - strand, within Pf6N2E2_497 at 564.834 kb on - strand, within Pf6N2E2_497 at 564.834 kb on - strand, within Pf6N2E2_497 at 565.028 kb on + strand, within Pf6N2E2_497 at 565.197 kb on + strand, within Pf6N2E2_497 at 565.198 kb on - strand, within Pf6N2E2_497 at 565.256 kb on + strand at 565.262 kb on + strand at 565.262 kb on + strand at 565.656 kb on + strand at 565.658 kb on + strand at 565.658 kb on + strand at 565.658 kb on + strand at 565.658 kb on + strand at 565.684 kb on + strand at 565.684 kb on + strand at 566.224 kb on + strand, within Pf6N2E2_498 at 566.224 kb on + strand, within Pf6N2E2_498 at 566.234 kb on + strand, within Pf6N2E2_498 at 566.262 kb on - strand, within Pf6N2E2_498 at 566.306 kb on + strand, within Pf6N2E2_498
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3 remove 563,022 - Pf6N2E2_496 0.22 -0.8 563,022 - Pf6N2E2_496 0.22 +0.2 563,022 - Pf6N2E2_496 0.22 +0.2 563,036 + Pf6N2E2_496 0.23 +0.2 563,036 + Pf6N2E2_496 0.23 -1.0 563,036 + Pf6N2E2_496 0.23 +0.2 563,522 + Pf6N2E2_496 0.61 -0.8 563,522 + Pf6N2E2_496 0.61 +0.2 563,523 - Pf6N2E2_496 0.61 -1.3 563,523 - Pf6N2E2_496 0.61 +0.2 563,523 - Pf6N2E2_496 0.61 +0.1 563,523 - Pf6N2E2_496 0.61 +0.2 563,523 - Pf6N2E2_496 0.61 +1.1 563,523 - Pf6N2E2_496 0.61 +0.2 563,555 + Pf6N2E2_496 0.63 -0.5 563,555 + Pf6N2E2_496 0.63 +0.2 563,556 - Pf6N2E2_496 0.63 +0.2 563,556 - Pf6N2E2_496 0.63 -0.8 563,843 + Pf6N2E2_496 0.86 -1.1 563,936 + +0.2 563,937 - +0.2 563,937 - +0.8 563,937 - -0.8 563,937 - -0.8 563,937 - -0.6 564,024 - +0.2 564,141 - +0.8 564,141 - +0.2 564,617 + Pf6N2E2_497 0.43 +0.2 564,617 + Pf6N2E2_497 0.43 +0.2 564,815 + Pf6N2E2_497 0.58 +0.2 564,815 + Pf6N2E2_497 0.58 -0.8 564,833 + Pf6N2E2_497 0.59 -2.1 564,834 - Pf6N2E2_497 0.59 -1.5 564,834 - Pf6N2E2_497 0.59 +0.2 564,834 - Pf6N2E2_497 0.59 -1.3 565,028 + Pf6N2E2_497 0.74 -1.3 565,197 + Pf6N2E2_497 0.86 -0.8 565,198 - Pf6N2E2_497 0.86 -0.8 565,256 + +0.2 565,262 + +0.2 565,262 + +0.2 565,656 + -1.3 565,658 + +0.2 565,658 + -0.6 565,658 + -1.8 565,658 + +0.2 565,684 + +1.2 565,684 + -0.8 566,224 + Pf6N2E2_498 0.45 -0.8 566,224 + Pf6N2E2_498 0.45 +0.2 566,234 + Pf6N2E2_498 0.46 +0.2 566,262 - Pf6N2E2_498 0.48 -0.4 566,306 + Pf6N2E2_498 0.51 -0.8
Or see this region's nucleotide sequence