Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4726 and Pf6N2E2_4727 are separated by 24 nucleotides Pf6N2E2_4727 and Pf6N2E2_4728 are separated by 179 nucleotides
Pf6N2E2_4726 - YD repeat protein, at 5,465,726 to 5,466,757
_4726
Pf6N2E2_4727 - Cold shock protein CspD, at 5,466,782 to 5,466,994
_4727
Pf6N2E2_4728 - hypothetical protein, at 5,467,174 to 5,467,539
_4728
Position (kb) 5466
5467 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5465.818 kb on - strand at 5465.840 kb on - strand, within Pf6N2E2_4726 at 5466.161 kb on + strand, within Pf6N2E2_4726 at 5466.161 kb on + strand, within Pf6N2E2_4726 at 5466.164 kb on + strand, within Pf6N2E2_4726 at 5466.164 kb on + strand, within Pf6N2E2_4726 at 5466.165 kb on - strand, within Pf6N2E2_4726 at 5466.166 kb on + strand, within Pf6N2E2_4726 at 5466.273 kb on + strand, within Pf6N2E2_4726 at 5466.279 kb on + strand, within Pf6N2E2_4726 at 5466.279 kb on + strand, within Pf6N2E2_4726 at 5466.279 kb on + strand, within Pf6N2E2_4726 at 5466.279 kb on + strand, within Pf6N2E2_4726 at 5466.279 kb on + strand, within Pf6N2E2_4726 at 5466.279 kb on + strand, within Pf6N2E2_4726 at 5466.279 kb on + strand, within Pf6N2E2_4726 at 5466.279 kb on + strand, within Pf6N2E2_4726 at 5466.279 kb on + strand, within Pf6N2E2_4726 at 5466.280 kb on - strand, within Pf6N2E2_4726 at 5466.280 kb on - strand, within Pf6N2E2_4726 at 5466.280 kb on - strand, within Pf6N2E2_4726 at 5466.280 kb on - strand, within Pf6N2E2_4726 at 5466.280 kb on - strand, within Pf6N2E2_4726 at 5466.280 kb on - strand, within Pf6N2E2_4726 at 5466.280 kb on - strand, within Pf6N2E2_4726 at 5466.280 kb on - strand, within Pf6N2E2_4726 at 5466.280 kb on - strand, within Pf6N2E2_4726 at 5466.280 kb on - strand, within Pf6N2E2_4726 at 5466.283 kb on + strand, within Pf6N2E2_4726 at 5466.283 kb on + strand, within Pf6N2E2_4726 at 5466.283 kb on + strand, within Pf6N2E2_4726 at 5466.283 kb on + strand, within Pf6N2E2_4726 at 5466.283 kb on + strand, within Pf6N2E2_4726 at 5466.283 kb on + strand, within Pf6N2E2_4726 at 5466.283 kb on + strand, within Pf6N2E2_4726 at 5466.283 kb on + strand, within Pf6N2E2_4726 at 5466.283 kb on + strand, within Pf6N2E2_4726 at 5466.283 kb on + strand, within Pf6N2E2_4726 at 5466.284 kb on - strand, within Pf6N2E2_4726 at 5466.284 kb on - strand, within Pf6N2E2_4726 at 5466.367 kb on + strand, within Pf6N2E2_4726 at 5466.378 kb on + strand, within Pf6N2E2_4726 at 5466.378 kb on + strand, within Pf6N2E2_4726 at 5466.427 kb on + strand, within Pf6N2E2_4726 at 5466.428 kb on - strand, within Pf6N2E2_4726 at 5466.468 kb on + strand, within Pf6N2E2_4726 at 5466.480 kb on + strand, within Pf6N2E2_4726 at 5466.532 kb on + strand, within Pf6N2E2_4726 at 5466.536 kb on + strand, within Pf6N2E2_4726 at 5466.536 kb on + strand, within Pf6N2E2_4726 at 5466.537 kb on - strand, within Pf6N2E2_4726 at 5466.537 kb on - strand, within Pf6N2E2_4726 at 5466.537 kb on - strand, within Pf6N2E2_4726 at 5466.537 kb on - strand, within Pf6N2E2_4726 at 5466.537 kb on - strand, within Pf6N2E2_4726 at 5466.537 kb on - strand, within Pf6N2E2_4726 at 5466.537 kb on - strand, within Pf6N2E2_4726 at 5466.537 kb on - strand, within Pf6N2E2_4726 at 5466.537 kb on - strand, within Pf6N2E2_4726 at 5466.578 kb on + strand, within Pf6N2E2_4726 at 5466.579 kb on - strand, within Pf6N2E2_4726 at 5466.616 kb on + strand, within Pf6N2E2_4726 at 5466.616 kb on + strand, within Pf6N2E2_4726 at 5466.616 kb on + strand, within Pf6N2E2_4726 at 5466.617 kb on - strand, within Pf6N2E2_4726 at 5466.617 kb on - strand, within Pf6N2E2_4726 at 5466.617 kb on - strand, within Pf6N2E2_4726 at 5466.626 kb on + strand, within Pf6N2E2_4726 at 5466.627 kb on - strand, within Pf6N2E2_4726 at 5466.627 kb on - strand, within Pf6N2E2_4726 at 5466.627 kb on - strand, within Pf6N2E2_4726 at 5466.654 kb on + strand at 5466.655 kb on - strand at 5466.655 kb on - strand at 5466.717 kb on + strand at 5466.718 kb on - strand at 5466.718 kb on - strand at 5466.793 kb on + strand at 5466.868 kb on + strand, within Pf6N2E2_4727 at 5466.868 kb on + strand, within Pf6N2E2_4727 at 5466.868 kb on + strand, within Pf6N2E2_4727 at 5466.868 kb on + strand, within Pf6N2E2_4727 at 5466.868 kb on + strand, within Pf6N2E2_4727 at 5466.868 kb on + strand, within Pf6N2E2_4727 at 5466.869 kb on - strand, within Pf6N2E2_4727 at 5466.871 kb on - strand, within Pf6N2E2_4727 at 5466.942 kb on + strand, within Pf6N2E2_4727 at 5467.071 kb on + strand at 5467.072 kb on - strand at 5467.072 kb on - strand at 5467.094 kb on + strand at 5467.094 kb on + strand at 5467.094 kb on + strand at 5467.095 kb on - strand at 5467.095 kb on - strand at 5467.112 kb on + strand at 5467.112 kb on + strand at 5467.112 kb on + strand at 5467.113 kb on - strand at 5467.113 kb on - strand at 5467.113 kb on - strand at 5467.132 kb on + strand at 5467.150 kb on - strand at 5467.321 kb on + strand, within Pf6N2E2_4728 at 5467.321 kb on + strand, within Pf6N2E2_4728 at 5467.321 kb on + strand, within Pf6N2E2_4728 at 5467.322 kb on - strand, within Pf6N2E2_4728 at 5467.346 kb on + strand, within Pf6N2E2_4728 at 5467.435 kb on + strand, within Pf6N2E2_4728 at 5467.436 kb on - strand, within Pf6N2E2_4728 at 5467.436 kb on - strand, within Pf6N2E2_4728 at 5467.450 kb on + strand, within Pf6N2E2_4728 at 5467.450 kb on + strand, within Pf6N2E2_4728 at 5467.450 kb on + strand, within Pf6N2E2_4728 at 5467.450 kb on + strand, within Pf6N2E2_4728 at 5467.513 kb on + strand at 5467.513 kb on + strand at 5467.514 kb on - strand at 5467.514 kb on - strand at 5467.514 kb on - strand at 5467.514 kb on - strand at 5467.635 kb on + strand at 5467.635 kb on + strand at 5467.635 kb on + strand at 5467.635 kb on + strand at 5467.635 kb on + strand at 5467.635 kb on + strand at 5467.635 kb on + strand at 5467.636 kb on - strand at 5467.636 kb on - strand at 5467.636 kb on - strand at 5467.640 kb on + strand at 5467.686 kb on + strand at 5467.686 kb on + strand at 5467.686 kb on + strand at 5467.686 kb on + strand at 5467.686 kb on + strand at 5467.686 kb on + strand at 5467.686 kb on + strand at 5467.687 kb on - strand at 5467.687 kb on - strand at 5467.687 kb on - strand at 5467.687 kb on - strand at 5467.687 kb on - strand at 5467.687 kb on - strand at 5467.687 kb on - strand at 5467.687 kb on - strand at 5467.687 kb on - strand at 5467.687 kb on - strand at 5467.688 kb on + strand at 5467.688 kb on + strand at 5467.688 kb on + strand at 5467.688 kb on + strand at 5467.689 kb on - strand at 5467.689 kb on - strand at 5467.689 kb on - strand at 5467.700 kb on - strand at 5467.742 kb on + strand at 5467.743 kb on - strand at 5467.743 kb on - strand at 5467.743 kb on - strand at 5467.743 kb on - strand at 5467.768 kb on - strand at 5467.808 kb on + strand at 5467.808 kb on + strand at 5467.809 kb on - strand at 5467.883 kb on - strand at 5467.911 kb on - strand at 5467.956 kb on + strand at 5467.957 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3 remove 5,465,818 - +0.5 5,465,840 - Pf6N2E2_4726 0.11 +0.5 5,466,161 + Pf6N2E2_4726 0.42 +0.5 5,466,161 + Pf6N2E2_4726 0.42 +0.5 5,466,164 + Pf6N2E2_4726 0.42 -1.0 5,466,164 + Pf6N2E2_4726 0.42 -0.5 5,466,165 - Pf6N2E2_4726 0.43 -0.5 5,466,166 + Pf6N2E2_4726 0.43 +0.9 5,466,273 + Pf6N2E2_4726 0.53 +0.5 5,466,279 + Pf6N2E2_4726 0.54 -0.6 5,466,279 + Pf6N2E2_4726 0.54 +1.3 5,466,279 + Pf6N2E2_4726 0.54 +0.5 5,466,279 + Pf6N2E2_4726 0.54 +0.5 5,466,279 + Pf6N2E2_4726 0.54 +0.5 5,466,279 + Pf6N2E2_4726 0.54 +0.5 5,466,279 + Pf6N2E2_4726 0.54 -0.5 5,466,279 + Pf6N2E2_4726 0.54 +0.5 5,466,279 + Pf6N2E2_4726 0.54 +0.5 5,466,280 - Pf6N2E2_4726 0.54 -0.5 5,466,280 - Pf6N2E2_4726 0.54 +0.5 5,466,280 - Pf6N2E2_4726 0.54 +0.5 5,466,280 - Pf6N2E2_4726 0.54 -0.5 5,466,280 - Pf6N2E2_4726 0.54 -0.2 5,466,280 - Pf6N2E2_4726 0.54 -0.5 5,466,280 - Pf6N2E2_4726 0.54 +0.5 5,466,280 - Pf6N2E2_4726 0.54 -1.0 5,466,280 - Pf6N2E2_4726 0.54 +0.5 5,466,280 - Pf6N2E2_4726 0.54 -1.6 5,466,283 + Pf6N2E2_4726 0.54 -0.6 5,466,283 + Pf6N2E2_4726 0.54 -0.2 5,466,283 + Pf6N2E2_4726 0.54 -0.3 5,466,283 + Pf6N2E2_4726 0.54 +0.5 5,466,283 + Pf6N2E2_4726 0.54 -1.3 5,466,283 + Pf6N2E2_4726 0.54 -0.5 5,466,283 + Pf6N2E2_4726 0.54 -1.0 5,466,283 + Pf6N2E2_4726 0.54 -1.5 5,466,283 + Pf6N2E2_4726 0.54 +0.5 5,466,283 + Pf6N2E2_4726 0.54 -0.5 5,466,284 - Pf6N2E2_4726 0.54 -1.0 5,466,284 - Pf6N2E2_4726 0.54 +0.5 5,466,367 + Pf6N2E2_4726 0.62 -1.0 5,466,378 + Pf6N2E2_4726 0.63 -0.5 5,466,378 + Pf6N2E2_4726 0.63 -0.0 5,466,427 + Pf6N2E2_4726 0.68 -0.5 5,466,428 - Pf6N2E2_4726 0.68 -1.0 5,466,468 + Pf6N2E2_4726 0.72 +0.5 5,466,480 + Pf6N2E2_4726 0.73 -0.5 5,466,532 + Pf6N2E2_4726 0.78 -2.6 5,466,536 + Pf6N2E2_4726 0.78 +0.5 5,466,536 + Pf6N2E2_4726 0.78 -1.0 5,466,537 - Pf6N2E2_4726 0.79 +0.5 5,466,537 - Pf6N2E2_4726 0.79 -1.0 5,466,537 - Pf6N2E2_4726 0.79 -0.8 5,466,537 - Pf6N2E2_4726 0.79 +0.5 5,466,537 - Pf6N2E2_4726 0.79 +0.5 5,466,537 - Pf6N2E2_4726 0.79 +0.5 5,466,537 - Pf6N2E2_4726 0.79 +0.5 5,466,537 - Pf6N2E2_4726 0.79 -0.5 5,466,537 - Pf6N2E2_4726 0.79 +0.5 5,466,578 + Pf6N2E2_4726 0.83 +0.5 5,466,579 - Pf6N2E2_4726 0.83 +0.5 5,466,616 + Pf6N2E2_4726 0.86 -1.6 5,466,616 + Pf6N2E2_4726 0.86 +0.3 5,466,616 + Pf6N2E2_4726 0.86 -2.0 5,466,617 - Pf6N2E2_4726 0.86 -1.0 5,466,617 - Pf6N2E2_4726 0.86 -1.5 5,466,617 - Pf6N2E2_4726 0.86 -0.5 5,466,626 + Pf6N2E2_4726 0.87 +0.5 5,466,627 - Pf6N2E2_4726 0.87 -0.5 5,466,627 - Pf6N2E2_4726 0.87 -0.5 5,466,627 - Pf6N2E2_4726 0.87 +0.9 5,466,654 + -0.0 5,466,655 - -0.5 5,466,655 - +0.5 5,466,717 + -0.2 5,466,718 - -1.1 5,466,718 - -0.5 5,466,793 + -0.5 5,466,868 + Pf6N2E2_4727 0.40 -1.0 5,466,868 + Pf6N2E2_4727 0.40 -0.5 5,466,868 + Pf6N2E2_4727 0.40 -1.5 5,466,868 + Pf6N2E2_4727 0.40 -0.5 5,466,868 + Pf6N2E2_4727 0.40 -1.0 5,466,868 + Pf6N2E2_4727 0.40 +0.5 5,466,869 - Pf6N2E2_4727 0.41 +0.5 5,466,871 - Pf6N2E2_4727 0.42 +0.5 5,466,942 + Pf6N2E2_4727 0.75 -1.9 5,467,071 + +0.5 5,467,072 - +0.5 5,467,072 - -0.3 5,467,094 + -0.6 5,467,094 + +0.5 5,467,094 + -0.5 5,467,095 - -1.0 5,467,095 - -1.0 5,467,112 + -0.5 5,467,112 + +0.5 5,467,112 + -1.5 5,467,113 - -0.5 5,467,113 - +0.5 5,467,113 - -0.3 5,467,132 + -0.5 5,467,150 - -0.5 5,467,321 + Pf6N2E2_4728 0.40 -1.5 5,467,321 + Pf6N2E2_4728 0.40 -0.8 5,467,321 + Pf6N2E2_4728 0.40 +0.5 5,467,322 - Pf6N2E2_4728 0.40 -1.1 5,467,346 + Pf6N2E2_4728 0.47 -0.3 5,467,435 + Pf6N2E2_4728 0.71 -0.6 5,467,436 - Pf6N2E2_4728 0.72 -1.8 5,467,436 - Pf6N2E2_4728 0.72 +0.5 5,467,450 + Pf6N2E2_4728 0.75 -0.1 5,467,450 + Pf6N2E2_4728 0.75 +0.5 5,467,450 + Pf6N2E2_4728 0.75 +0.5 5,467,450 + Pf6N2E2_4728 0.75 -0.5 5,467,513 + +0.5 5,467,513 + -1.1 5,467,514 - -0.5 5,467,514 - -0.5 5,467,514 - +0.5 5,467,514 - -0.8 5,467,635 + +0.5 5,467,635 + -0.5 5,467,635 + +0.5 5,467,635 + -1.5 5,467,635 + +0.5 5,467,635 + +0.5 5,467,635 + -1.1 5,467,636 - -0.3 5,467,636 - -0.5 5,467,636 - -0.5 5,467,640 + -0.5 5,467,686 + -0.5 5,467,686 + +0.5 5,467,686 + -1.1 5,467,686 + +0.5 5,467,686 + +0.5 5,467,686 + -0.5 5,467,686 + +0.5 5,467,687 - +0.5 5,467,687 - -1.1 5,467,687 - -0.5 5,467,687 - +0.5 5,467,687 - +0.5 5,467,687 - -0.5 5,467,687 - -2.8 5,467,687 - -1.5 5,467,687 - -1.1 5,467,687 - +0.5 5,467,688 + -0.5 5,467,688 + +0.5 5,467,688 + +0.5 5,467,688 + +0.5 5,467,689 - +0.5 5,467,689 - +0.5 5,467,689 - -0.5 5,467,700 - -0.5 5,467,742 + -1.8 5,467,743 - +0.5 5,467,743 - -0.5 5,467,743 - -1.5 5,467,743 - -0.7 5,467,768 - -1.5 5,467,808 + -0.1 5,467,808 + -0.5 5,467,809 - +0.5 5,467,883 - +0.5 5,467,911 - +0.5 5,467,956 + +0.5 5,467,957 - -1.1
Or see this region's nucleotide sequence