Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_438 and Pf6N2E2_439 are separated by 301 nucleotides Pf6N2E2_439 and Pf6N2E2_440 are separated by 30 nucleotides Pf6N2E2_440 and Pf6N2E2_441 are separated by 203 nucleotides Pf6N2E2_441 and Pf6N2E2_442 are separated by 109 nucleotides
Pf6N2E2_438 - hypothetical protein, at 503,841 to 504,569
_438
Pf6N2E2_439 - FIG00958580: hypothetical protein, at 504,871 to 505,041
_439
Pf6N2E2_440 - FIG00954920: hypothetical protein, at 505,072 to 505,374
_440
Pf6N2E2_441 - FIG00958773: hypothetical protein, at 505,578 to 505,928
_441
Pf6N2E2_442 - FIG00962345: hypothetical protein, at 506,038 to 506,268
_442
Position (kb) 504
505
506 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 503.882 kb on + strand at 504.059 kb on + strand, within Pf6N2E2_438 at 504.122 kb on - strand, within Pf6N2E2_438 at 504.145 kb on + strand, within Pf6N2E2_438 at 504.146 kb on - strand, within Pf6N2E2_438 at 504.146 kb on - strand, within Pf6N2E2_438 at 504.161 kb on - strand, within Pf6N2E2_438 at 504.299 kb on - strand, within Pf6N2E2_438 at 504.355 kb on + strand, within Pf6N2E2_438 at 504.528 kb on + strand at 504.528 kb on + strand at 504.529 kb on - strand at 504.529 kb on - strand at 504.856 kb on + strand at 504.857 kb on - strand at 505.010 kb on + strand, within Pf6N2E2_439 at 505.010 kb on + strand, within Pf6N2E2_439 at 505.010 kb on + strand, within Pf6N2E2_439 at 505.010 kb on + strand, within Pf6N2E2_439 at 505.011 kb on - strand, within Pf6N2E2_439 at 505.011 kb on - strand, within Pf6N2E2_439 at 505.022 kb on + strand, within Pf6N2E2_439 at 505.022 kb on + strand, within Pf6N2E2_439 at 505.023 kb on - strand, within Pf6N2E2_439 at 505.023 kb on - strand, within Pf6N2E2_439 at 505.023 kb on - strand, within Pf6N2E2_439 at 505.023 kb on - strand, within Pf6N2E2_439 at 505.242 kb on - strand, within Pf6N2E2_440 at 505.242 kb on - strand, within Pf6N2E2_440 at 505.242 kb on - strand, within Pf6N2E2_440 at 505.242 kb on - strand, within Pf6N2E2_440 at 505.269 kb on + strand, within Pf6N2E2_440 at 505.440 kb on + strand at 505.441 kb on - strand at 505.457 kb on - strand at 505.457 kb on - strand at 505.457 kb on - strand at 505.459 kb on + strand at 505.491 kb on - strand at 505.491 kb on - strand at 505.511 kb on + strand at 505.512 kb on - strand at 505.577 kb on + strand at 505.577 kb on + strand at 505.577 kb on + strand at 505.577 kb on + strand at 505.577 kb on + strand at 505.692 kb on + strand, within Pf6N2E2_441 at 505.693 kb on - strand, within Pf6N2E2_441 at 505.971 kb on + strand at 505.971 kb on + strand at 505.972 kb on - strand at 505.972 kb on - strand at 506.024 kb on + strand at 506.024 kb on + strand at 506.024 kb on + strand at 506.024 kb on + strand at 506.025 kb on - strand at 506.025 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3 remove 503,882 + +0.3 504,059 + Pf6N2E2_438 0.30 +0.3 504,122 - Pf6N2E2_438 0.39 -1.0 504,145 + Pf6N2E2_438 0.42 +0.3 504,146 - Pf6N2E2_438 0.42 +0.3 504,146 - Pf6N2E2_438 0.42 -0.7 504,161 - Pf6N2E2_438 0.44 -0.6 504,299 - Pf6N2E2_438 0.63 +0.3 504,355 + Pf6N2E2_438 0.71 -1.5 504,528 + -0.4 504,528 + -0.7 504,529 - +0.3 504,529 - -1.3 504,856 + +0.5 504,857 - +0.3 505,010 + Pf6N2E2_439 0.81 -0.9 505,010 + Pf6N2E2_439 0.81 +0.3 505,010 + Pf6N2E2_439 0.81 -0.9 505,010 + Pf6N2E2_439 0.81 +0.3 505,011 - Pf6N2E2_439 0.82 -0.7 505,011 - Pf6N2E2_439 0.82 -3.0 505,022 + Pf6N2E2_439 0.88 -0.7 505,022 + Pf6N2E2_439 0.88 +0.3 505,023 - Pf6N2E2_439 0.89 -0.8 505,023 - Pf6N2E2_439 0.89 -0.7 505,023 - Pf6N2E2_439 0.89 -0.7 505,023 - Pf6N2E2_439 0.89 +0.3 505,242 - Pf6N2E2_440 0.56 -0.7 505,242 - Pf6N2E2_440 0.56 +0.3 505,242 - Pf6N2E2_440 0.56 -0.7 505,242 - Pf6N2E2_440 0.56 +0.3 505,269 + Pf6N2E2_440 0.65 +0.3 505,440 + +0.3 505,441 - -0.7 505,457 - -0.4 505,457 - -1.7 505,457 - +0.3 505,459 + +0.3 505,491 - -0.7 505,491 - -1.3 505,511 + -1.3 505,512 - -0.7 505,577 + -0.8 505,577 + +0.3 505,577 + -0.7 505,577 + -0.7 505,577 + +0.3 505,692 + Pf6N2E2_441 0.32 -0.6 505,693 - Pf6N2E2_441 0.33 -0.7 505,971 + +0.3 505,971 + +0.3 505,972 - -0.7 505,972 - -0.5 506,024 + -0.6 506,024 + +0.3 506,024 + +0.3 506,024 + +0.3 506,025 - -0.7 506,025 - -0.4
Or see this region's nucleotide sequence