Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3700

Experiment: Ying_all64 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 3
4,314,063	+		Pf6N2E2_3698	0.38	+0.5
4,314,063	+		Pf6N2E2_3698	0.38	+0.5
4,314,063	+		Pf6N2E2_3698	0.38	-0.5
4,314,064	-		Pf6N2E2_3698	0.38	+0.5
4,314,423	+				-1.1
4,314,424	-				+0.5
4,314,517	+				-0.5
4,314,517	+				+0.5
4,314,517	+				-0.5
4,314,517	+				+0.2
4,314,517	+				+0.5
4,314,518	-				+0.5
4,314,518	-				+0.5
4,314,518	-				-1.0
4,314,518	-				-0.5
4,314,518	-				+0.5
4,314,518	-				-0.5
4,314,518	-				-0.5
4,314,518	-				-0.5
4,314,519	+				-0.5
4,314,519	+				+0.5
4,314,520	-				+0.5
4,314,520	-				+0.5
4,314,520	-				+0.5
4,314,521	+				-0.5
4,314,521	+				+0.5
4,314,521	+				-1.1
4,314,521	+				+0.5
4,314,521	+				+0.0
4,314,521	+				-0.5
4,314,521	+				-1.1
4,314,521	+				-1.5
4,314,521	+				-0.5
4,314,521	+				-0.5
4,314,521	+				-0.7
4,314,521	+				-2.5
4,314,521	+				+0.5
4,314,522	-				-0.6
4,314,522	-				+0.1
4,314,522	-				+0.7
4,314,522	-				-1.1
4,314,522	-				-0.5
4,314,522	-				-0.5
4,314,522	-				+0.5
4,314,522	-				-1.1
4,314,522	-				+0.9
4,314,522	-				-1.9
4,314,522	-				+0.5
4,314,522	-				-0.5
4,314,660	+		Pf6N2E2_3699	0.23	+0.5
4,314,661	-		Pf6N2E2_3699	0.23	+0.5
4,314,696	-		Pf6N2E2_3699	0.31	+0.5
4,314,738	+		Pf6N2E2_3699	0.41	-0.5
4,314,738	+		Pf6N2E2_3699	0.41	-1.3
4,314,738	+		Pf6N2E2_3699	0.41	-0.5
4,314,738	+		Pf6N2E2_3699	0.41	-0.5
4,314,738	+		Pf6N2E2_3699	0.41	-0.3
4,314,738	+		Pf6N2E2_3699	0.41	-0.5
4,314,738	+		Pf6N2E2_3699	0.41	-0.5
4,314,738	+		Pf6N2E2_3699	0.41	-1.6
4,314,739	-		Pf6N2E2_3699	0.42	-0.6
4,314,739	-		Pf6N2E2_3699	0.42	+0.5
4,314,739	-		Pf6N2E2_3699	0.42	-2.5
4,314,739	-		Pf6N2E2_3699	0.42	-0.1
4,314,856	-		Pf6N2E2_3699	0.69	-1.0
4,315,042	-				+0.5
4,315,042	-				+0.5
4,315,042	-				-1.1
4,315,042	-				-1.8
4,315,042	-				-1.1
4,315,098	+				-0.5
4,315,099	-				+0.5
4,315,099	-				+0.5
4,315,099	-				-1.1
4,315,185	+		Pf6N2E2_3700	0.16	-1.1
4,315,192	-		Pf6N2E2_3700	0.17	-1.1
4,315,192	-		Pf6N2E2_3700	0.17	-0.8
4,315,192	-		Pf6N2E2_3700	0.17	-1.5
4,315,192	-		Pf6N2E2_3700	0.17	-0.1
4,315,192	-		Pf6N2E2_3700	0.17	-0.7
4,315,245	+		Pf6N2E2_3700	0.21	-0.2
4,315,245	+		Pf6N2E2_3700	0.21	+0.5
4,315,245	+		Pf6N2E2_3700	0.21	-0.4
4,315,245	+		Pf6N2E2_3700	0.21	-1.4
4,315,245	+		Pf6N2E2_3700	0.21	-0.5
4,315,245	+		Pf6N2E2_3700	0.21	+0.5
4,315,245	+		Pf6N2E2_3700	0.21	+0.5
4,315,245	+		Pf6N2E2_3700	0.21	+0.5
4,315,246	-		Pf6N2E2_3700	0.21	+0.5
4,315,246	-		Pf6N2E2_3700	0.21	-1.2
4,315,246	-		Pf6N2E2_3700	0.21	-0.5
4,315,246	-		Pf6N2E2_3700	0.21	-1.1
4,315,246	-		Pf6N2E2_3700	0.21	-1.7
4,315,246	-		Pf6N2E2_3700	0.21	-0.5
4,315,246	-		Pf6N2E2_3700	0.21	-1.1
4,315,246	-		Pf6N2E2_3700	0.21	-0.5
4,315,246	-		Pf6N2E2_3700	0.21	-0.5
4,315,297	+		Pf6N2E2_3700	0.26	-0.9
4,315,297	+		Pf6N2E2_3700	0.26	-1.8
4,315,308	+		Pf6N2E2_3700	0.27	+0.5
4,315,308	+		Pf6N2E2_3700	0.27	-0.6
4,315,308	+		Pf6N2E2_3700	0.27	-0.3
4,315,547	+		Pf6N2E2_3700	0.47	+0.5
4,315,547	+		Pf6N2E2_3700	0.47	-1.8
4,315,547	+		Pf6N2E2_3700	0.47	-0.5
4,315,547	+		Pf6N2E2_3700	0.47	-0.5
4,315,548	-		Pf6N2E2_3700	0.47	-0.8
4,315,548	-		Pf6N2E2_3700	0.47	-0.4
4,315,548	-		Pf6N2E2_3700	0.47	+0.5
4,315,548	-		Pf6N2E2_3700	0.47	+0.1
4,315,548	-		Pf6N2E2_3700	0.47	-0.5
4,315,548	-		Pf6N2E2_3700	0.47	-1.0
4,315,803	+		Pf6N2E2_3700	0.68	-1.1
4,315,803	+		Pf6N2E2_3700	0.68	+0.5
4,315,803	+		Pf6N2E2_3700	0.68	-0.5
4,315,803	+		Pf6N2E2_3700	0.68	-0.9
4,315,804	-		Pf6N2E2_3700	0.68	+0.5
4,315,845	+		Pf6N2E2_3700	0.72	-0.5
4,315,845	+		Pf6N2E2_3700	0.72	-1.5
4,315,845	+		Pf6N2E2_3700	0.72	-0.5
4,315,846	-		Pf6N2E2_3700	0.72	+0.5
4,316,022	+		Pf6N2E2_3700	0.86	+0.5
4,316,023	-		Pf6N2E2_3700	0.86	+0.5
4,316,023	-		Pf6N2E2_3700	0.86	+0.1
4,316,023	-		Pf6N2E2_3700	0.86	-0.5
4,316,080	-				+0.5
4,316,274	+				+0.5
4,316,274	+				+0.5
4,316,274	+				-0.5
4,316,274	+				-1.5
4,316,274	+				-0.2
4,316,275	-				-1.1
4,316,279	-				-1.1
4,316,323	+		Pf6N2E2_3701	0.14	+0.5
4,316,431	+		Pf6N2E2_3701	0.24	-0.5
4,316,431	+		Pf6N2E2_3701	0.24	-0.4
4,316,431	+		Pf6N2E2_3701	0.24	-0.5
4,316,432	-		Pf6N2E2_3701	0.25	-0.5
4,316,432	-		Pf6N2E2_3701	0.25	-1.4
4,316,432	-		Pf6N2E2_3701	0.25	+0.5
4,316,602	+		Pf6N2E2_3701	0.41	-1.1
4,316,602	+		Pf6N2E2_3701	0.41	-1.1
4,316,602	+		Pf6N2E2_3701	0.41	-0.5
4,316,602	+		Pf6N2E2_3701	0.41	-0.5
4,316,602	+		Pf6N2E2_3701	0.41	-0.5
4,316,602	+		Pf6N2E2_3701	0.41	+0.5
4,316,603	-		Pf6N2E2_3701	0.42	+0.5
4,316,603	-		Pf6N2E2_3701	0.42	-0.5
4,316,769	+		Pf6N2E2_3701	0.58	-0.7
4,316,800	+		Pf6N2E2_3701	0.61	-0.5