Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3592

Experiment: Ying_all64 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 3
4,180,255	-		Pf6N2E2_3589	0.77	+0.5
4,180,419	+				-1.1
4,180,477	-				-0.5
4,180,477	-				-1.1
4,180,671	+				+0.5
4,180,671	+				-0.3
4,180,671	+				+0.5
4,180,671	+				+0.5
4,180,672	-				-1.5
4,180,672	-				-1.1
4,180,672	-				-0.5
4,180,672	-				-0.3
4,180,672	-				+0.5
4,180,709	+				+0.5
4,180,709	+				+0.5
4,180,861	+		Pf6N2E2_3591	0.37	+0.5
4,180,862	-		Pf6N2E2_3591	0.37	+0.5
4,180,862	-		Pf6N2E2_3591	0.37	-0.5
4,180,862	-		Pf6N2E2_3591	0.37	-1.5
4,180,862	-		Pf6N2E2_3591	0.37	+0.5
4,180,906	+		Pf6N2E2_3591	0.49	-1.1
4,180,906	+		Pf6N2E2_3591	0.49	-0.3
4,180,955	+		Pf6N2E2_3591	0.62	-1.1
4,181,124	+				-1.1
4,181,124	+				+0.5
4,181,124	+				-0.5
4,181,124	+				-0.5
4,181,124	+				+0.5
4,181,125	-				+0.5
4,181,125	-				-1.1
4,181,125	-				-0.3
4,181,125	-				-0.5
4,181,134	+				-0.5
4,181,222	+				+0.5
4,181,222	+				-0.5
4,181,222	+				+1.5
4,181,222	+				-1.1
4,181,223	-				+0.5
4,181,223	-				+0.5
4,181,223	-				-1.5
4,181,423	+		Pf6N2E2_3592	0.20	-1.1
4,181,424	-		Pf6N2E2_3592	0.20	+0.5
4,181,750	+		Pf6N2E2_3592	0.57	-0.5
4,181,750	+		Pf6N2E2_3592	0.57	-1.1
4,181,750	+		Pf6N2E2_3592	0.57	-0.5
4,181,750	+		Pf6N2E2_3592	0.57	-0.5
4,181,750	+		Pf6N2E2_3592	0.57	-0.5
4,181,750	+		Pf6N2E2_3592	0.57	-2.2
4,181,750	+		Pf6N2E2_3592	0.57	-2.7
4,181,750	+		Pf6N2E2_3592	0.57	+0.5
4,181,750	+		Pf6N2E2_3592	0.57	-1.1
4,181,750	+		Pf6N2E2_3592	0.57	-0.7
4,181,751	-		Pf6N2E2_3592	0.57	-0.7
4,181,751	-		Pf6N2E2_3592	0.57	-1.1
4,181,751	-		Pf6N2E2_3592	0.57	-1.1
4,181,751	-		Pf6N2E2_3592	0.57	+0.5
4,181,751	-		Pf6N2E2_3592	0.57	-1.3
4,181,751	-		Pf6N2E2_3592	0.57	-1.5
4,181,751	-		Pf6N2E2_3592	0.57	-1.1
4,181,751	-		Pf6N2E2_3592	0.57	-0.5
4,181,751	-		Pf6N2E2_3592	0.57	-1.1
4,181,751	-		Pf6N2E2_3592	0.57	-1.3
4,181,751	-		Pf6N2E2_3592	0.57	+0.5
4,181,813	+		Pf6N2E2_3592	0.64	-0.5
4,181,814	-		Pf6N2E2_3592	0.64	-0.5
4,181,814	-		Pf6N2E2_3592	0.64	+0.5
4,181,814	-		Pf6N2E2_3592	0.64	-1.5
4,181,814	-		Pf6N2E2_3592	0.64	-1.3
4,182,092	+				+0.5
4,182,092	+				+0.5
4,182,093	-				-0.5
4,182,093	-				-1.1
4,182,502	+		Pf6N2E2_3593	0.15	-0.5
4,182,502	+		Pf6N2E2_3593	0.15	-1.1
4,182,503	-		Pf6N2E2_3593	0.15	-0.5
4,182,559	-		Pf6N2E2_3593	0.17	+0.5
4,183,000	+		Pf6N2E2_3593	0.35	+1.3
4,183,000	+		Pf6N2E2_3593	0.35	+0.5
4,183,001	-		Pf6N2E2_3593	0.35	+0.5
4,183,001	-		Pf6N2E2_3593	0.35	+0.5
4,183,001	-		Pf6N2E2_3593	0.35	+0.5
4,183,001	-		Pf6N2E2_3593	0.35	+0.5
4,183,001	-		Pf6N2E2_3593	0.35	+0.5
4,183,001	-		Pf6N2E2_3593	0.35	-0.5
4,183,001	-		Pf6N2E2_3593	0.35	-1.1
4,183,100	-		Pf6N2E2_3593	0.39	+0.3
4,183,100	-		Pf6N2E2_3593	0.39	+0.5
4,183,131	+		Pf6N2E2_3593	0.40	+0.5