Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3462 and Pf6N2E2_3463 are separated by 71 nucleotides Pf6N2E2_3463 and Pf6N2E2_3464 are separated by 101 nucleotides
Pf6N2E2_3462 - Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27), at 4,042,563 to 4,044,056
_3462
Pf6N2E2_3463 - Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18), at 4,044,128 to 4,045,498
_3463
Pf6N2E2_3464 - LysR family transcriptional regulator PA0133, at 4,045,600 to 4,046,520
_3464
Position (kb)
4044
4045
4046 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4043.240 kb on - strand, within Pf6N2E2_3462 at 4043.359 kb on + strand, within Pf6N2E2_3462 at 4043.359 kb on + strand, within Pf6N2E2_3462 at 4043.360 kb on - strand, within Pf6N2E2_3462 at 4043.360 kb on - strand, within Pf6N2E2_3462 at 4043.360 kb on - strand, within Pf6N2E2_3462 at 4043.360 kb on - strand, within Pf6N2E2_3462 at 4043.360 kb on - strand, within Pf6N2E2_3462 at 4043.360 kb on - strand, within Pf6N2E2_3462 at 4043.360 kb on - strand, within Pf6N2E2_3462 at 4043.360 kb on - strand, within Pf6N2E2_3462 at 4043.365 kb on + strand, within Pf6N2E2_3462 at 4043.366 kb on - strand, within Pf6N2E2_3462 at 4043.366 kb on - strand, within Pf6N2E2_3462 at 4043.581 kb on + strand, within Pf6N2E2_3462 at 4043.582 kb on - strand, within Pf6N2E2_3462 at 4043.582 kb on - strand, within Pf6N2E2_3462 at 4043.582 kb on - strand, within Pf6N2E2_3462 at 4043.679 kb on + strand, within Pf6N2E2_3462 at 4043.679 kb on + strand, within Pf6N2E2_3462 at 4043.679 kb on + strand, within Pf6N2E2_3462 at 4043.680 kb on - strand, within Pf6N2E2_3462 at 4043.692 kb on + strand, within Pf6N2E2_3462 at 4043.813 kb on + strand, within Pf6N2E2_3462 at 4043.814 kb on - strand, within Pf6N2E2_3462 at 4043.882 kb on + strand, within Pf6N2E2_3462 at 4043.882 kb on + strand, within Pf6N2E2_3462 at 4043.882 kb on + strand, within Pf6N2E2_3462 at 4043.883 kb on - strand, within Pf6N2E2_3462 at 4043.883 kb on - strand, within Pf6N2E2_3462 at 4043.883 kb on - strand, within Pf6N2E2_3462 at 4043.961 kb on - strand at 4043.961 kb on - strand at 4044.072 kb on - strand at 4044.102 kb on + strand at 4044.112 kb on + strand at 4044.112 kb on + strand at 4044.112 kb on + strand at 4044.112 kb on + strand at 4044.112 kb on + strand at 4044.112 kb on + strand at 4044.112 kb on + strand at 4044.112 kb on + strand at 4044.112 kb on + strand at 4044.113 kb on - strand at 4044.113 kb on - strand at 4044.113 kb on - strand at 4044.113 kb on - strand at 4044.113 kb on - strand at 4044.113 kb on - strand at 4044.113 kb on - strand at 4044.240 kb on + strand at 4044.240 kb on + strand at 4044.240 kb on + strand at 4044.240 kb on + strand at 4044.240 kb on + strand at 4044.240 kb on + strand at 4044.240 kb on + strand at 4044.240 kb on + strand at 4044.240 kb on + strand at 4044.241 kb on - strand at 4044.241 kb on - strand at 4044.241 kb on - strand at 4044.337 kb on - strand, within Pf6N2E2_3463 at 4044.337 kb on - strand, within Pf6N2E2_3463 at 4044.337 kb on - strand, within Pf6N2E2_3463 at 4044.340 kb on + strand, within Pf6N2E2_3463 at 4044.340 kb on + strand, within Pf6N2E2_3463 at 4044.341 kb on - strand, within Pf6N2E2_3463 at 4044.341 kb on - strand, within Pf6N2E2_3463 at 4044.341 kb on - strand, within Pf6N2E2_3463 at 4044.341 kb on - strand, within Pf6N2E2_3463 at 4044.492 kb on + strand, within Pf6N2E2_3463 at 4044.492 kb on + strand, within Pf6N2E2_3463 at 4044.492 kb on + strand, within Pf6N2E2_3463 at 4044.493 kb on - strand, within Pf6N2E2_3463 at 4044.499 kb on - strand, within Pf6N2E2_3463 at 4044.555 kb on + strand, within Pf6N2E2_3463 at 4044.555 kb on + strand, within Pf6N2E2_3463 at 4044.555 kb on + strand, within Pf6N2E2_3463 at 4044.556 kb on - strand, within Pf6N2E2_3463 at 4044.754 kb on - strand, within Pf6N2E2_3463 at 4044.754 kb on - strand, within Pf6N2E2_3463 at 4044.754 kb on - strand, within Pf6N2E2_3463 at 4044.900 kb on + strand, within Pf6N2E2_3463 at 4044.900 kb on + strand, within Pf6N2E2_3463 at 4044.900 kb on + strand, within Pf6N2E2_3463 at 4045.021 kb on - strand, within Pf6N2E2_3463 at 4045.021 kb on - strand, within Pf6N2E2_3463 at 4045.077 kb on + strand, within Pf6N2E2_3463 at 4045.225 kb on - strand, within Pf6N2E2_3463 at 4045.317 kb on + strand, within Pf6N2E2_3463 at 4045.317 kb on + strand, within Pf6N2E2_3463 at 4045.317 kb on + strand, within Pf6N2E2_3463 at 4045.318 kb on - strand, within Pf6N2E2_3463 at 4045.407 kb on + strand at 4045.407 kb on + strand at 4045.408 kb on - strand at 4045.498 kb on + strand at 4045.499 kb on - strand at 4045.499 kb on - strand at 4045.531 kb on + strand at 4045.531 kb on + strand at 4045.532 kb on - strand at 4045.532 kb on - strand at 4045.532 kb on - strand at 4045.532 kb on - strand at 4045.532 kb on - strand at 4045.573 kb on - strand at 4045.599 kb on + strand at 4045.648 kb on - strand at 4045.648 kb on - strand at 4045.834 kb on + strand, within Pf6N2E2_3464 at 4045.834 kb on + strand, within Pf6N2E2_3464 at 4045.834 kb on + strand, within Pf6N2E2_3464 at 4045.834 kb on + strand, within Pf6N2E2_3464 at 4045.853 kb on + strand, within Pf6N2E2_3464 at 4045.853 kb on + strand, within Pf6N2E2_3464 at 4045.854 kb on - strand, within Pf6N2E2_3464 at 4045.854 kb on - strand, within Pf6N2E2_3464 at 4046.084 kb on + strand, within Pf6N2E2_3464 at 4046.084 kb on + strand, within Pf6N2E2_3464 at 4046.084 kb on + strand, within Pf6N2E2_3464 at 4046.084 kb on + strand, within Pf6N2E2_3464 at 4046.084 kb on + strand, within Pf6N2E2_3464 at 4046.084 kb on + strand, within Pf6N2E2_3464 at 4046.119 kb on + strand, within Pf6N2E2_3464 at 4046.131 kb on + strand, within Pf6N2E2_3464 at 4046.131 kb on + strand, within Pf6N2E2_3464 at 4046.132 kb on - strand, within Pf6N2E2_3464 at 4046.152 kb on + strand, within Pf6N2E2_3464 at 4046.152 kb on + strand, within Pf6N2E2_3464 at 4046.153 kb on - strand, within Pf6N2E2_3464 at 4046.153 kb on - strand, within Pf6N2E2_3464 at 4046.153 kb on - strand, within Pf6N2E2_3464 at 4046.179 kb on + strand, within Pf6N2E2_3464 at 4046.179 kb on + strand, within Pf6N2E2_3464 at 4046.179 kb on + strand, within Pf6N2E2_3464 at 4046.179 kb on + strand, within Pf6N2E2_3464 at 4046.179 kb on + strand, within Pf6N2E2_3464 at 4046.180 kb on - strand, within Pf6N2E2_3464 at 4046.262 kb on - strand, within Pf6N2E2_3464 at 4046.262 kb on - strand, within Pf6N2E2_3464 at 4046.344 kb on + strand, within Pf6N2E2_3464 at 4046.344 kb on + strand, within Pf6N2E2_3464 at 4046.344 kb on + strand, within Pf6N2E2_3464 at 4046.344 kb on + strand, within Pf6N2E2_3464 at 4046.345 kb on - strand, within Pf6N2E2_3464 at 4046.345 kb on - strand, within Pf6N2E2_3464 at 4046.345 kb on - strand, within Pf6N2E2_3464 at 4046.353 kb on + strand, within Pf6N2E2_3464 at 4046.353 kb on + strand, within Pf6N2E2_3464 at 4046.368 kb on + strand, within Pf6N2E2_3464 at 4046.368 kb on + strand, within Pf6N2E2_3464 at 4046.368 kb on + strand, within Pf6N2E2_3464 at 4046.428 kb on + strand, within Pf6N2E2_3464 at 4046.428 kb on + strand, within Pf6N2E2_3464 at 4046.429 kb on - strand at 4046.429 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3 remove 4,043,240 - Pf6N2E2_3462 0.45 -1.2 4,043,359 + Pf6N2E2_3462 0.53 -1.0 4,043,359 + Pf6N2E2_3462 0.53 +0.4 4,043,360 - Pf6N2E2_3462 0.53 -0.5 4,043,360 - Pf6N2E2_3462 0.53 +0.4 4,043,360 - Pf6N2E2_3462 0.53 +0.4 4,043,360 - Pf6N2E2_3462 0.53 -0.8 4,043,360 - Pf6N2E2_3462 0.53 -0.6 4,043,360 - Pf6N2E2_3462 0.53 -1.2 4,043,360 - Pf6N2E2_3462 0.53 -0.8 4,043,360 - Pf6N2E2_3462 0.53 -0.6 4,043,365 + Pf6N2E2_3462 0.54 +0.4 4,043,366 - Pf6N2E2_3462 0.54 -1.8 4,043,366 - Pf6N2E2_3462 0.54 +0.4 4,043,581 + Pf6N2E2_3462 0.68 -2.0 4,043,582 - Pf6N2E2_3462 0.68 -0.6 4,043,582 - Pf6N2E2_3462 0.68 +0.4 4,043,582 - Pf6N2E2_3462 0.68 -0.6 4,043,679 + Pf6N2E2_3462 0.75 -0.6 4,043,679 + Pf6N2E2_3462 0.75 +0.4 4,043,679 + Pf6N2E2_3462 0.75 +0.4 4,043,680 - Pf6N2E2_3462 0.75 +0.4 4,043,692 + Pf6N2E2_3462 0.76 -0.4 4,043,813 + Pf6N2E2_3462 0.84 +0.4 4,043,814 - Pf6N2E2_3462 0.84 +0.4 4,043,882 + Pf6N2E2_3462 0.88 -0.6 4,043,882 + Pf6N2E2_3462 0.88 +0.4 4,043,882 + Pf6N2E2_3462 0.88 -0.6 4,043,883 - Pf6N2E2_3462 0.88 -0.9 4,043,883 - Pf6N2E2_3462 0.88 -1.0 4,043,883 - Pf6N2E2_3462 0.88 -0.6 4,043,961 - +0.4 4,043,961 - +0.4 4,044,072 - -1.2 4,044,102 + -1.2 4,044,112 + +1.0 4,044,112 + +0.4 4,044,112 + -0.3 4,044,112 + +0.4 4,044,112 + +0.4 4,044,112 + +0.4 4,044,112 + -1.9 4,044,112 + +0.4 4,044,112 + +0.4 4,044,113 - -1.6 4,044,113 - +0.4 4,044,113 - +0.4 4,044,113 - -1.2 4,044,113 - -0.6 4,044,113 - -1.2 4,044,113 - -0.6 4,044,240 + +0.4 4,044,240 + +0.4 4,044,240 + +0.4 4,044,240 + -1.0 4,044,240 + -0.3 4,044,240 + -1.8 4,044,240 + -1.2 4,044,240 + -0.6 4,044,240 + -2.6 4,044,241 - -2.2 4,044,241 - +0.4 4,044,241 - +0.4 4,044,337 - Pf6N2E2_3463 0.15 -0.6 4,044,337 - Pf6N2E2_3463 0.15 -0.6 4,044,337 - Pf6N2E2_3463 0.15 +0.4 4,044,340 + Pf6N2E2_3463 0.15 -1.9 4,044,340 + Pf6N2E2_3463 0.15 -0.9 4,044,341 - Pf6N2E2_3463 0.16 +0.4 4,044,341 - Pf6N2E2_3463 0.16 -1.2 4,044,341 - Pf6N2E2_3463 0.16 +0.4 4,044,341 - Pf6N2E2_3463 0.16 +0.4 4,044,492 + Pf6N2E2_3463 0.27 -0.6 4,044,492 + Pf6N2E2_3463 0.27 -2.9 4,044,492 + Pf6N2E2_3463 0.27 +0.4 4,044,493 - Pf6N2E2_3463 0.27 +0.4 4,044,499 - Pf6N2E2_3463 0.27 +0.4 4,044,555 + Pf6N2E2_3463 0.31 +0.4 4,044,555 + Pf6N2E2_3463 0.31 -1.2 4,044,555 + Pf6N2E2_3463 0.31 +0.4 4,044,556 - Pf6N2E2_3463 0.31 -1.3 4,044,754 - Pf6N2E2_3463 0.46 -1.2 4,044,754 - Pf6N2E2_3463 0.46 -1.2 4,044,754 - Pf6N2E2_3463 0.46 -1.0 4,044,900 + Pf6N2E2_3463 0.56 -1.2 4,044,900 + Pf6N2E2_3463 0.56 -1.2 4,044,900 + Pf6N2E2_3463 0.56 +0.4 4,045,021 - Pf6N2E2_3463 0.65 +0.4 4,045,021 - Pf6N2E2_3463 0.65 +0.4 4,045,077 + Pf6N2E2_3463 0.69 +0.4 4,045,225 - Pf6N2E2_3463 0.80 -0.3 4,045,317 + Pf6N2E2_3463 0.87 -1.6 4,045,317 + Pf6N2E2_3463 0.87 -0.6 4,045,317 + Pf6N2E2_3463 0.87 +0.4 4,045,318 - Pf6N2E2_3463 0.87 +1.4 4,045,407 + +0.4 4,045,407 + -1.2 4,045,408 - -0.6 4,045,498 + +0.4 4,045,499 - -1.4 4,045,499 - -1.2 4,045,531 + -1.2 4,045,531 + +1.4 4,045,532 - +0.4 4,045,532 - +0.4 4,045,532 - -0.6 4,045,532 - -0.5 4,045,532 - +0.4 4,045,573 - -0.6 4,045,599 + +0.4 4,045,648 - -1.2 4,045,648 - +0.4 4,045,834 + Pf6N2E2_3464 0.25 -1.0 4,045,834 + Pf6N2E2_3464 0.25 -0.6 4,045,834 + Pf6N2E2_3464 0.25 -0.6 4,045,834 + Pf6N2E2_3464 0.25 -1.2 4,045,853 + Pf6N2E2_3464 0.27 -0.6 4,045,853 + Pf6N2E2_3464 0.27 -1.5 4,045,854 - Pf6N2E2_3464 0.28 +0.4 4,045,854 - Pf6N2E2_3464 0.28 -0.6 4,046,084 + Pf6N2E2_3464 0.53 +0.4 4,046,084 + Pf6N2E2_3464 0.53 +0.4 4,046,084 + Pf6N2E2_3464 0.53 +0.4 4,046,084 + Pf6N2E2_3464 0.53 -0.6 4,046,084 + Pf6N2E2_3464 0.53 +0.4 4,046,084 + Pf6N2E2_3464 0.53 -2.6 4,046,119 + Pf6N2E2_3464 0.56 +0.4 4,046,131 + Pf6N2E2_3464 0.58 -0.9 4,046,131 + Pf6N2E2_3464 0.58 -0.6 4,046,132 - Pf6N2E2_3464 0.58 -0.6 4,046,152 + Pf6N2E2_3464 0.60 -1.2 4,046,152 + Pf6N2E2_3464 0.60 -0.6 4,046,153 - Pf6N2E2_3464 0.60 -1.1 4,046,153 - Pf6N2E2_3464 0.60 +0.4 4,046,153 - Pf6N2E2_3464 0.60 +0.4 4,046,179 + Pf6N2E2_3464 0.63 -0.7 4,046,179 + Pf6N2E2_3464 0.63 -0.6 4,046,179 + Pf6N2E2_3464 0.63 +1.4 4,046,179 + Pf6N2E2_3464 0.63 +0.4 4,046,179 + Pf6N2E2_3464 0.63 -0.6 4,046,180 - Pf6N2E2_3464 0.63 -0.6 4,046,262 - Pf6N2E2_3464 0.72 +0.4 4,046,262 - Pf6N2E2_3464 0.72 -0.6 4,046,344 + Pf6N2E2_3464 0.81 -0.6 4,046,344 + Pf6N2E2_3464 0.81 +0.1 4,046,344 + Pf6N2E2_3464 0.81 -1.6 4,046,344 + Pf6N2E2_3464 0.81 +0.4 4,046,345 - Pf6N2E2_3464 0.81 +0.4 4,046,345 - Pf6N2E2_3464 0.81 -0.6 4,046,345 - Pf6N2E2_3464 0.81 +0.4 4,046,353 + Pf6N2E2_3464 0.82 -0.0 4,046,353 + Pf6N2E2_3464 0.82 -0.6 4,046,368 + Pf6N2E2_3464 0.83 +0.4 4,046,368 + Pf6N2E2_3464 0.83 -1.2 4,046,368 + Pf6N2E2_3464 0.83 +0.4 4,046,428 + Pf6N2E2_3464 0.90 -2.2 4,046,428 + Pf6N2E2_3464 0.90 -1.2 4,046,429 - -1.2 4,046,429 - +0.4
Or see this region's nucleotide sequence