Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_324

Experiment: Ying_all64 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_323 and Pf6N2E2_324 overlap by 4 nucleotidesPf6N2E2_324 and Pf6N2E2_325 are separated by 44 nucleotidesPf6N2E2_325 and Pf6N2E2_326 are separated by 33 nucleotides Pf6N2E2_323 - Nucleoside-diphosphate-sugar epimerases, at 391,587 to 392,762 _323 Pf6N2E2_324 - Inosose isomerase (EC 5.3.99.-), at 392,759 to 393,850 _324 Pf6N2E2_325 - hypothetical protein, at 393,895 to 394,008 _325 Pf6N2E2_326 - Putative nucleoside transporter YegT, at 394,042 to 395,274 _326 Position (kb) 392 393 394Strain fitness (log2 ratio) -3 -2 -1 0 1at 391.776 kb on + strand, within Pf6N2E2_323at 391.993 kb on - strand, within Pf6N2E2_323at 392.006 kb on + strand, within Pf6N2E2_323at 392.010 kb on + strand, within Pf6N2E2_323at 392.010 kb on + strand, within Pf6N2E2_323at 392.010 kb on + strand, within Pf6N2E2_323at 392.010 kb on + strand, within Pf6N2E2_323at 392.011 kb on - strand, within Pf6N2E2_323at 392.138 kb on + strand, within Pf6N2E2_323at 392.246 kb on + strand, within Pf6N2E2_323at 392.257 kb on + strand, within Pf6N2E2_323at 392.257 kb on + strand, within Pf6N2E2_323at 392.257 kb on + strand, within Pf6N2E2_323at 392.258 kb on - strand, within Pf6N2E2_323at 392.258 kb on - strand, within Pf6N2E2_323at 392.258 kb on - strand, within Pf6N2E2_323at 392.258 kb on - strand, within Pf6N2E2_323at 392.404 kb on - strand, within Pf6N2E2_323at 392.613 kb on - strand, within Pf6N2E2_323at 392.764 kb on + strandat 392.803 kb on + strandat 392.885 kb on + strand, within Pf6N2E2_324at 392.886 kb on - strand, within Pf6N2E2_324at 392.921 kb on + strand, within Pf6N2E2_324at 392.922 kb on - strand, within Pf6N2E2_324at 392.922 kb on - strand, within Pf6N2E2_324at 392.922 kb on - strand, within Pf6N2E2_324at 392.922 kb on - strand, within Pf6N2E2_324at 392.922 kb on - strand, within Pf6N2E2_324at 392.957 kb on + strand, within Pf6N2E2_324at 392.958 kb on - strand, within Pf6N2E2_324at 393.215 kb on + strand, within Pf6N2E2_324at 393.215 kb on + strand, within Pf6N2E2_324at 393.216 kb on - strand, within Pf6N2E2_324at 393.332 kb on + strand, within Pf6N2E2_324at 393.332 kb on + strand, within Pf6N2E2_324at 393.425 kb on + strand, within Pf6N2E2_324at 393.425 kb on + strand, within Pf6N2E2_324at 393.426 kb on - strand, within Pf6N2E2_324at 393.461 kb on + strand, within Pf6N2E2_324at 393.461 kb on + strand, within Pf6N2E2_324at 393.462 kb on - strand, within Pf6N2E2_324at 393.462 kb on - strand, within Pf6N2E2_324at 393.462 kb on - strand, within Pf6N2E2_324at 393.848 kb on + strandat 393.849 kb on - strandat 393.849 kb on - strandat 393.849 kb on - strandat 393.869 kb on + strandat 393.897 kb on - strandat 394.027 kb on - strandat 394.027 kb on - strandat 394.027 kb on - strandat 394.092 kb on + strandat 394.336 kb on + strand, within Pf6N2E2_326at 394.336 kb on + strand, within Pf6N2E2_326at 394.337 kb on - strand, within Pf6N2E2_326at 394.337 kb on - strand, within Pf6N2E2_326at 394.348 kb on + strand, within Pf6N2E2_326at 394.348 kb on + strand, within Pf6N2E2_326at 394.348 kb on + strand, within Pf6N2E2_326at 394.348 kb on + strand, within Pf6N2E2_326at 394.348 kb on + strand, within Pf6N2E2_326at 394.349 kb on - strand, within Pf6N2E2_326at 394.349 kb on - strand, within Pf6N2E2_326at 394.349 kb on - strand, within Pf6N2E2_326at 394.349 kb on - strand, within Pf6N2E2_326at 394.360 kb on + strand, within Pf6N2E2_326at 394.360 kb on + strand, within Pf6N2E2_326at 394.360 kb on + strand, within Pf6N2E2_326at 394.361 kb on - strand, within Pf6N2E2_326at 394.539 kb on + strand, within Pf6N2E2_326at 394.540 kb on - strand, within Pf6N2E2_326at 394.582 kb on + strand, within Pf6N2E2_326at 394.582 kb on + strand, within Pf6N2E2_326at 394.583 kb on - strand, within Pf6N2E2_326at 394.583 kb on - strand, within Pf6N2E2_326at 394.690 kb on + strand, within Pf6N2E2_326at 394.690 kb on + strand, within Pf6N2E2_326at 394.742 kb on - strand, within Pf6N2E2_326at 394.742 kb on - strand, within Pf6N2E2_326at 394.742 kb on - strand, within Pf6N2E2_326at 394.742 kb on - strand, within Pf6N2E2_326at 394.742 kb on - strand, within Pf6N2E2_326at 394.742 kb on - strand, within Pf6N2E2_326at 394.742 kb on - strand, within Pf6N2E2_326at 394.744 kb on + strand, within Pf6N2E2_326

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3
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391,776 + Pf6N2E2_323 0.16 +0.3
391,993 - Pf6N2E2_323 0.35 +0.3
392,006 + Pf6N2E2_323 0.36 +0.3
392,010 + Pf6N2E2_323 0.36 +0.3
392,010 + Pf6N2E2_323 0.36 +0.3
392,010 + Pf6N2E2_323 0.36 -0.7
392,010 + Pf6N2E2_323 0.36 +0.3
392,011 - Pf6N2E2_323 0.36 -3.5
392,138 + Pf6N2E2_323 0.47 -0.6
392,246 + Pf6N2E2_323 0.56 +0.3
392,257 + Pf6N2E2_323 0.57 -1.7
392,257 + Pf6N2E2_323 0.57 -1.3
392,257 + Pf6N2E2_323 0.57 -0.7
392,258 - Pf6N2E2_323 0.57 +0.3
392,258 - Pf6N2E2_323 0.57 -0.7
392,258 - Pf6N2E2_323 0.57 +0.3
392,258 - Pf6N2E2_323 0.57 +0.3
392,404 - Pf6N2E2_323 0.69 +0.3
392,613 - Pf6N2E2_323 0.87 +0.3
392,764 + -1.0
392,803 + +0.3
392,885 + Pf6N2E2_324 0.12 +0.3
392,886 - Pf6N2E2_324 0.12 -0.7
392,921 + Pf6N2E2_324 0.15 -0.7
392,922 - Pf6N2E2_324 0.15 +0.3
392,922 - Pf6N2E2_324 0.15 -0.7
392,922 - Pf6N2E2_324 0.15 -0.7
392,922 - Pf6N2E2_324 0.15 +0.3
392,922 - Pf6N2E2_324 0.15 +0.3
392,957 + Pf6N2E2_324 0.18 -0.3
392,958 - Pf6N2E2_324 0.18 +0.3
393,215 + Pf6N2E2_324 0.42 -1.1
393,215 + Pf6N2E2_324 0.42 +0.3
393,216 - Pf6N2E2_324 0.42 -1.3
393,332 + Pf6N2E2_324 0.52 +0.9
393,332 + Pf6N2E2_324 0.52 -0.7
393,425 + Pf6N2E2_324 0.61 -0.4
393,425 + Pf6N2E2_324 0.61 -1.3
393,426 - Pf6N2E2_324 0.61 -0.7
393,461 + Pf6N2E2_324 0.64 +0.3
393,461 + Pf6N2E2_324 0.64 +0.3
393,462 - Pf6N2E2_324 0.64 -0.7
393,462 - Pf6N2E2_324 0.64 +0.3
393,462 - Pf6N2E2_324 0.64 -1.7
393,848 + -1.1
393,849 - +0.3
393,849 - +0.3
393,849 - +0.3
393,869 + +0.3
393,897 - +0.3
394,027 - +0.3
394,027 - -0.7
394,027 - +0.3
394,092 + -0.7
394,336 + Pf6N2E2_326 0.24 -0.5
394,336 + Pf6N2E2_326 0.24 -1.7
394,337 - Pf6N2E2_326 0.24 -0.7
394,337 - Pf6N2E2_326 0.24 +0.3
394,348 + Pf6N2E2_326 0.25 +0.3
394,348 + Pf6N2E2_326 0.25 +0.3
394,348 + Pf6N2E2_326 0.25 +0.3
394,348 + Pf6N2E2_326 0.25 +0.3
394,348 + Pf6N2E2_326 0.25 +0.3
394,349 - Pf6N2E2_326 0.25 +0.3
394,349 - Pf6N2E2_326 0.25 -0.7
394,349 - Pf6N2E2_326 0.25 +0.0
394,349 - Pf6N2E2_326 0.25 -0.7
394,360 + Pf6N2E2_326 0.26 +0.3
394,360 + Pf6N2E2_326 0.26 +0.3
394,360 + Pf6N2E2_326 0.26 +0.3
394,361 - Pf6N2E2_326 0.26 -0.7
394,539 + Pf6N2E2_326 0.40 +0.3
394,540 - Pf6N2E2_326 0.40 +0.3
394,582 + Pf6N2E2_326 0.44 -2.3
394,582 + Pf6N2E2_326 0.44 -0.7
394,583 - Pf6N2E2_326 0.44 -0.6
394,583 - Pf6N2E2_326 0.44 +0.3
394,690 + Pf6N2E2_326 0.53 -0.1
394,690 + Pf6N2E2_326 0.53 -1.3
394,742 - Pf6N2E2_326 0.57 +0.3
394,742 - Pf6N2E2_326 0.57 +0.3
394,742 - Pf6N2E2_326 0.57 +0.3
394,742 - Pf6N2E2_326 0.57 -0.7
394,742 - Pf6N2E2_326 0.57 -1.0
394,742 - Pf6N2E2_326 0.57 -0.9
394,742 - Pf6N2E2_326 0.57 +0.3
394,744 + Pf6N2E2_326 0.57 -1.1

Or see this region's nucleotide sequence